Hg_chrom6_TN10mRNA_12715
Organism: Heterodera glycines Gene Locus: chr6:8304679-8307906 Feature type: polypeptideProtein Sequence
Length: 262
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.799 | 1.509 | 1.041 | 0.526 | 1.527 | 0.979 | 0.364 | 0.954 | 1.612 | 1.186 | 1.504 | 1.796 | 0.954 | 0.734 | 0.935 | 0.872 | 0.626 | 1.041 | 0.294 | 1.01 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11972
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.652
|
0.104
|
0.009
|
0.452
|
0.037
|
0.079
|
0.110
|
0.043
|
0.068
|
0.112
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002316
|
3.000
|
1.000
|
Hsc_gene_9731.t1
|
Hsc_gene_9731.t1;Hsc_gene_9731.t2
|
— |
Q5RFD3.1 Proteasome activator complex subunit 3 [Pongo abelii]
|
KAH7731657.1 Proteasome activator pa28 beta subunit family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008537
|
GO:0005575_0.725|GO:0110165_0.722|GO:0008150_0.715|GO:0005622_0.692|GO:0043226_0.641|GO:0016020_0.637|GO:0043227_0.581|GO:0005737_0.574|GO:0032991_0.515
|
IPR003185+14-64+|IPR003186+116-258+|IPR009077+11-260+|IPR036252+12-254+|IPR036996+12-67+|IPR036997+115-254+
|
— |
PF02251+14-64+Proteasome_activator_PA28,_N-terminal|PF02252+116-258+Proteasome_activator_PA28,_C-terminal
|
G3DSA:1.20.120.180:FF:000001+115-254+Proteasome_activator_complex_subunit_3
|
PTHR10660+11-260+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19;262-262
|
1.000
|
20-261
|
1avo_N
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
30046.540
|
6.956
|
1.500
|
31.298
|
9.160
|
51.527
|
48.473
|
16.412
|
14.885
|
44.275
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
833.982
|
722.892
|
704.567
|
1173.623
|
1265.099
|
1187.122
|
930.044
|
1197.777
|
647.393
|
470.204
|
546.142
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.266
|
0.562
|
0.845
|
— | — |
-0.342
|
— | — | — | — | — | — | — |
No JSON data available for plots.