Hg_chrom6_TN10mRNA_12719
Organism: Heterodera glycines Gene Locus: chr6:8337511-8338586 Feature type: polypeptideProtein Sequence
Length: 156
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.671 | 1.342 | 1.632 | 0.663 | 0.427 | 0.493 | 1.145 | 0.641 | 1.425 | 1.04 | 0.777 | 0.377 | 2.671 | 0.74 | 1.047 | 1.465 | 0.631 | 0.777 | 0.493 | 1.131 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11976
|
— | — |
2.778
|
3.000
|
1.000
|
3.000
|
4.000
|
5.000
|
5.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.632
|
0.123
|
0.034
|
0.535
|
0.392
|
0.162
|
0.047
|
0.132
|
0.166
|
0.161
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000103
|
11.000
|
4.000
|
Hsc_gene_13658.t1;Hsc_gene_17480.t1;Hsc_gene_22734.t1;Hsc_gene_22926.t1
|
Hsc_gene_17480.t1;Hsc_gene_22734.t1;Hsc_gene_22926.t1
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAG5464479
|
0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.914|GO:0003674_0.839|GO:0003824_0.735|GO:0032502_0.714|GO:0048856_0.711|GO:0009653_0.680|GO:0048646_0.677|GO:0016740_0.675|GO:0030435_0.670|GO:0030587_0.670|GO:0043934_0.670|GO:0051703_0.670|GO:0099120_0.670|GO:0140096_0.666|GO:0016772_0.656|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650|GO:0016301_0.650|GO:0016773_0.650
|
IPR001870+1-149+|IPR003877+19-148_22-146+|IPR013320+18-149+|IPR043136+1-156+|IPR044736+4-145+
|
SM00449+19-148+
|
PF00622+22-146+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-156
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
17280.380
|
5.723
|
-1.000
|
23.077
|
15.385
|
44.872
|
55.128
|
11.538
|
11.538
|
55.128
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
cyan
|
3.947
|
1.671
|
2.705
|
2.117
|
6.154
|
4.129
|
7.601
|
4.001
|
0.000
|
6.625
|
3.786
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.512
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.