Hg_chrom6_TN10mRNA_12720
Organism: Heterodera glycines Gene Locus: chr6:8344115-8348173 Feature type: polypeptideProtein Sequence
Length: 581
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.52 | 1.401 | 1.127 | 0.415 | 1.32 | 1.368 | 0.82 | 1.119 | 1.3 | 1.093 | 1.591 | 0.911 | 2.056 | 0.463 | 0.492 | 1.033 | 0.818 | 0.782 | 0.927 | 0.861 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11977
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.626
|
0.106
|
0.027
|
0.523
|
0.361
|
0.226
|
0.090
|
0.026
|
0.108
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000904
|
3.000
|
3.000
|
Hsc_gene_12025.t1;Hsc_gene_12025.t2;Hsc_gene_22914.t1
|
Hsc_gene_12025.t1;Hsc_gene_12025.t2
|
— |
F4HYD7.1 Ran-binding protein M homolog [Arabidopsis thaliana]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAI8599527
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.806|GO:0005575_0.604|GO:0110165_0.603|GO:0005622_0.578|GO:0009987_0.543|GO:0043226_0.539|GO:0043229_0.528|GO:0016020_0.523|GO:0005737_0.507
|
IPR001870+199-387_383-575+|IPR003877+265-386_268-384_450-574_453-572+|IPR013320+209-390_401-575+|IPR043136+203-395_396-581+|IPR044736+252-383_435-571+|IPR050618+119-398+
|
SM00449+265-386_450-574+
|
PF00622+268-384_453-572+SPRY_domain
|
— |
PTHR12864+119-398+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
69-167
|
2.000
|
1-68;168-581
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
66382.050
|
6.454
|
-0.500
|
29.260
|
13.769
|
52.840
|
47.160
|
15.146
|
14.114
|
44.578
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
23.570
|
4.596
|
6.674
|
3.575
|
2.086
|
1.992
|
13.159
|
8.240
|
63.765
|
40.175
|
50.285
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.725
|
1.935
|
— | — | — | — | — | — |
No JSON data available for plots.