Hg_chrom6_TN10mRNA_12721
Organism: Heterodera glycines Gene Locus: chr6:8349313-8353885 Feature type: polypeptideProtein Sequence
Length: 807
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.648 | 1.787 | 1.194 | 0.598 | 1.136 | 1.398 | 0.87 | 1.115 | 1.57 | 0.921 | 1.089 | 0.583 | 2.134 | 0.548 | 0.658 | 1.098 | 0.711 | 0.713 | 0.763 | 0.911 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11978
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.521
|
0.106
|
0.011
|
0.481
|
0.303
|
0.323
|
0.098
|
0.056
|
0.069
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000600
|
1.000
|
6.000
|
Hsc_gene_15213.t1;Hsc_gene_17479.t1;Hsc_gene_22925.t1;Hsc_gene_23905.t1;Hsc_gene_23905.t2;Hsc_gene_24080.t1
|
— | — |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.803|GO:0005575_0.591|GO:0110165_0.589|GO:0005622_0.549|GO:0009987_0.525|GO:0016020_0.506|GO:0043226_0.501
|
IPR001870+173-362_356-550_607-801+|IPR003877+240-361_243-359_422-549_425-547_674-800_677-798+|IPR013320+183-362_360-550_625-801+|IPR043136+177-372_373-557_601-807+|IPR044736+226-358_407-546_659-797+|IPR050618+138-366+
|
SM00449+240-361_422-549_674-800+
|
PF00622+243-359_425-547_677-798+SPRY_domain
|
— |
PTHR12864+138-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-126
|
1.000
|
127-807
|
8bv0_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
91259.010
|
5.183
|
-15.000
|
26.022
|
14.002
|
51.177
|
48.823
|
12.639
|
13.383
|
48.451
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
176.474
|
33.831
|
103.855
|
132.783
|
249.328
|
166.843
|
308.834
|
78.704
|
14.313
|
358.524
|
211.005
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.385
|
1.835
|
0.466
|
0.879
|
-0.566
|
0.892
|
-1.192
|
2.110
|
— | — | — | — |
8.645
|
No JSON data available for plots.