Hg_chrom6_TN10mRNA_12724
Organism: Heterodera glycines Gene Locus: chr6:8366910-8369307 Feature type: polypeptideProtein Sequence
Length: 350
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.565 | 1.395 | 1.195 | 0.296 | 1.095 | 1.245 | 0.918 | 0.714 | 1.333 | 1.12 | 1.515 | 1.008 | 1.984 | 0.275 | 0.466 | 1.224 | 0.937 | 0.909 | 0.659 | 0.924 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11981
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
RKTAIGDGGMKRKMT
|
— | — | — | — | — | — |
0.001
|
— | — |
0.289
|
0.073
|
0.004
|
0.186
|
0.730
|
0.242
|
0.364
|
0.167
|
0.406
|
0.175
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAI0431062
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.942|GO:0003674_0.844|GO:0032502_0.733|GO:0048856_0.733|GO:0003824_0.712|GO:0009653_0.684|GO:0016740_0.677|GO:0048646_0.677|GO:0051703_0.674|GO:0030435_0.673|GO:0043934_0.673|GO:0030587_0.670|GO:0099120_0.670|GO:0140096_0.669|GO:0016772_0.659|GO:0016301_0.654|GO:0016773_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+152-344+|IPR003877+217-343_220-341+|IPR013320+169-344+|IPR043136+144-350+|IPR044736+202-340+
|
SM00449+217-343+
|
PF00622+220-341+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-350
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
39368.500
|
6.364
|
-0.500
|
26.857
|
12.571
|
52.000
|
48.000
|
13.714
|
13.143
|
47.714
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
8.801
|
5.064
|
8.345
|
9.162
|
8.139
|
4.609
|
20.481
|
1.944
|
0.514
|
16.464
|
9.629
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.161
|
— |
3.549
|
— | — | — | — | — |
No JSON data available for plots.