Hg_chrom6_TN10mRNA_12727
Organism: Heterodera glycines Gene Locus: chr6:8389614-8391153 Feature type: polypeptideProtein Sequence
Length: 351
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.663 | 1.789 | 0.466 | 1.081 | 1.045 | 0.804 | 0.644 | 1.709 | 1.393 | 1.579 | 0.907 | 2.179 | 1.266 | 0.712 | 1.279 | 0.895 | 1.214 | 0.518 | 0.657 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11984
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.407
|
0.568
|
0.029
|
0.572
|
0.263
|
0.059
|
0.136
|
0.128
|
0.112
|
0.269
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002111
|
3.000
|
1.000
|
Hsc_gene_980.t1
|
— | — |
Q22942.2 Choline kinase A2 [Caenorhabditis elegans]
|
KAJ1348642.1 Casein kinase II subunit alpha' [Parelaphostrongylus tenuis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.897|GO:0009987_0.804|GO:0003674_0.718|GO:0008152_0.676|GO:0044238_0.670|GO:0044237_0.664|GO:0009058_0.660|GO:0044249_0.613|GO:0006793_0.597|GO:0006796_0.597|GO:0006629_0.589|GO:0019637_0.586|GO:0008610_0.585|GO:0044255_0.585|GO:0006644_0.583|GO:0090407_0.583|GO:0005575_0.582|GO:0008654_0.582|GO:0003824_0.577|GO:0110165_0.575|GO:0016740_0.558|GO:0046486_0.551|GO:0006650_0.550|GO:0045017_0.549|GO:0046474_0.548|GO:0016772_0.537|GO:0016773_0.534|GO:0016301_0.533
|
IPR011009+16-263+
|
— |
PF01633+72-275+Choline/ethanolamine_kinase
|
— |
PTHR22603+16-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-351
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
40011.310
|
9.250
|
18.000
|
24.501
|
11.396
|
49.003
|
50.997
|
15.670
|
8.832
|
45.299
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
17.522
|
0.306
|
0.578
|
0.000
|
3.651
|
3.027
|
0.405
|
0.268
|
8.789
|
66.978
|
42.040
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
6.692
|
— |
-2.882
|
-3.577
|
— | — |
-7.778
|
— | — | — |
No JSON data available for plots.