Hg_chrom6_TN10mRNA_12734
Organism: Heterodera glycines Gene Locus: chr6:8493324-8495122 Feature type: polypeptideProtein Sequence
Length: 304
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 1.071 | 1.316 | 0.794 | 0.548 | 0.759 | 0.783 | 2.303 | 1.462 | 1.245 | 0.399 | 0.967 | 2.376 | 1.075 | 1.544 | 0.705 | 0.701 | 0.997 | 1.771 | 0.484 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11991
|
— | — |
1.667
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
3.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.847
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
45-65
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.532
|
0.226
|
0.048
|
0.435
|
0.188
|
0.061
|
0.056
|
0.045
|
0.229
|
0.193
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004450
|
1.000
|
2.000
|
Hsc_gene_12022.t1;Hsc_gene_5450.t1
|
Hsc_gene_12022.t1
|
— | — |
ADI82807.1 dorsal gland cell-specific expression protein [Heterodera avenae]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR041426+11-57+
|
— |
PF17906+11-57+HTH_domain_in_Mos1_transposase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-304
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
34772.850
|
7.322
|
6.000
|
25.329
|
17.105
|
42.105
|
57.895
|
14.803
|
10.526
|
49.013
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
8.397
|
3.826
|
4.619
|
9.877
|
8.508
|
7.290
|
24.134
|
2.504
|
0.000
|
13.952
|
7.972
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
1.200
|
— | — |
1.737
|
-1.657
|
3.420
|
— | — | — | — | — |
No JSON data available for plots.