Hg_chrom6_TN10mRNA_12737
Organism: Heterodera glycines Gene Locus: chr6:8510485-8511429 Feature type: polypeptideProtein Sequence
Length: 235
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.138 | 1.484 | 1.47 | 0.147 | 1.631 | 1.091 | 0.557 | 0.0 | 0.757 | 1.38 | 1.354 | 1.502 | 1.3 | 0.573 | 1.216 | 0.547 | 0.419 | 1.161 | 0.327 | 1.001 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11994
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKLLARAYKKLIDARRKQL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.609
|
0.355
|
0.056
|
0.544
|
0.128
|
0.114
|
0.143
|
0.007
|
0.315
|
0.281
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001130
|
4.000
|
1.000
|
Hsc_gene_17184.t1
|
— | — |
Q5XHK2.1 14-3-3 protein beta/alpha-A [Xenopus laevis]
|
P29309.1 14-3-3-like protein [Xenopus laevis];AAA49698.1 14-3-3 protein, partial [Xenopus laevis];AAB22176.1 14-3-3 regulatory protein [Xenopus laevis, pituitary gland, Peptide, 235 aa] [Xenopus laevis]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.868|GO:0005575_0.838|GO:0110165_0.835|GO:0005622_0.759|GO:0009987_0.757|GO:0003674_0.740|GO:0005488_0.685|GO:0043226_0.680|GO:0005737_0.653|GO:0016020_0.645|GO:0065007_0.594|GO:0005515_0.577|GO:0043227_0.560|GO:0050789_0.556|GO:0043229_0.531
|
IPR000308+1-235_2-225_26-55_111-133_146-172_173-199+|IPR023410+2-225_2-232+|IPR036815+1-231_4-226+
|
SM00101+2-232+
|
PF00244+2-225+14-3-3_protein
|
— |
PTHR18860+2-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-235
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
26784.380
|
4.721
|
-7.000
|
32.766
|
8.511
|
49.787
|
50.213
|
14.894
|
17.872
|
46.383
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
white
|
15.550
|
5.816
|
8.562
|
21.123
|
48.072
|
32.177
|
34.656
|
24.773
|
0.514
|
1.952
|
1.336
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.724
|
1.421
|
1.153
|
— | — | — | — | — |
4.773
|
— | — | — |
No JSON data available for plots.