Hg_chrom6_TN10mRNA_12741
Organism: Heterodera glycines Gene Locus: chr6:8541499-8546022 Feature type: polypeptideProtein Sequence
Length: 617
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.509 | 1.545 | 0.972 | 0.391 | 1.378 | 1.205 | 0.907 | 0.972 | 1.477 | 0.942 | 1.498 | 1.525 | 2.161 | 0.655 | 0.761 | 0.903 | 0.664 | 0.786 | 0.748 | 0.715 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11998
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.800
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KKMLQNENGKRRNDR,RKLKNEIEKIQEKFDKK
|
27-47
|
0.976
|
— | — | — | — |
0.000
|
— | — |
0.353
|
0.044
|
0.008
|
0.246
|
0.532
|
0.317
|
0.302
|
0.041
|
0.280
|
0.094
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004451
|
1.000
|
2.000
|
Hsc_gene_2265.t1;Hsc_gene_9654.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.749|GO:0005575_0.571|GO:0110165_0.570|GO:0005622_0.531|GO:0016020_0.515|GO:0043226_0.510
|
IPR001870+119-307_414-611+|IPR003877+185-306_188-304_481-610_484-608+|IPR013320+130-307_424-611+|IPR043136+123-321_411-617+|IPR044736+172-303_466-607+|IPR050618+129-352+
|
SM00449+185-306_481-610+
|
PF00622+188-304_484-608+SPRY_domain
|
— |
PTHR12864+129-352+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;336-398
|
2.000
|
4-335;399-617
|
8bv0_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.750
|
70543.280
|
7.481
|
6.000
|
29.173
|
13.128
|
50.891
|
49.109
|
15.559
|
13.614
|
44.084
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
171.077
|
12.286
|
136.891
|
117.796
|
200.707
|
83.433
|
70.690
|
434.622
|
17.950
|
338.841
|
201.317
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.249
|
3.127
|
— |
0.739
|
-1.253
|
— |
2.279
|
-2.483
|
-4.372
|
— | — | — | — |
No JSON data available for plots.