Hg_chrom6_TN10mRNA_12742
Organism: Heterodera glycines Gene Locus: chr6:8562917-8564123 Feature type: polypeptideProtein Sequence
Length: 312
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 0.894 | 0.408 | 0.663 | 0.801 | 1.151 | 0.763 | 1.923 | 0.712 | 1.213 | 0.389 | 1.697 | 1.603 | 1.356 | 1.308 | 1.465 | 0.788 | 1.214 | 1.233 | 0.943 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11999
|
— | — |
1.556
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.683
|
0.223
|
0.035
|
0.340
|
0.098
|
0.079
|
0.049
|
0.126
|
0.057
|
0.358
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000564
|
2.000
|
5.000
|
Hsc_gene_11986.t2;Hsc_gene_11986.t3;Hsc_gene_20657.t1;Hsc_gene_3996.t1;Hsc_gene_6143.t1
|
Hsc_gene_10218.t1;Hsc_gene_10218.t2;Hsc_gene_11986.t1;Hsc_gene_1400.t1;Hsc_gene_15248.t1;Hsc_gene_15248.t2;Hsc_gene_15248.t3;Hsc_gene_16965.t1;Hsc_gene_17664.t1;Hsc_gene_18920.t1;Hsc_gene_18920.t2;Hsc_gene_20657.t1;Hsc_gene_23891.t1;Hsc_gene_2931.t1;Hsc_gene_3845.t1;Hsc_gene_3996.t1;Hsc_gene_7268.t1;Hsc_gene_8868.t2;Hsc_gene_936.t1;Hsc_gene_9661.t1
|
— | — |
KAI1715010.1 malate dehydrogenase, cytoplasmic [Ditylenchus destructor]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR018289+7-82+
|
— |
PF10551+7-82+MULE_transposase_domain
|
— |
PTHR47160+26-296+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
299-312
|
1.000
|
1-298
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.913
|
34794.800
|
8.921
|
12.000
|
19.872
|
14.423
|
43.269
|
56.731
|
12.821
|
7.051
|
52.244
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
76.035
|
1.811
|
5.576
|
4.057
|
9.810
|
4.908
|
2.641
|
3.588
|
4.481
|
317.145
|
183.146
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.238
|
— | — | — | — |
-6.267
|
— |
-4.828
|
— | — |
No JSON data available for plots.