SCN Proteipedia

Hg_chrom6_TN10mRNA_12744

Organism: Heterodera glycines Gene Locus: chr6:8577360-8581238 Feature type: polypeptide

Protein Sequence

Length: 468

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.994	1.491	1.243	0.589	1.318	1.096	0.789	1.175	1.235	1.357	0.518	2.011	0.89	0.534	1.177	0.641	0.911	1.133	1.644	0.44	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12001	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.279	0.301	0.043	0.601	0.181	0.222	0.235	0.008	0.334	0.251

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000251	5.000	5.000	Hsc_gene_2112.t1;Hsc_gene_5351.t1;Hsc_gene_8005.t1;Hsc_gene_8006.t1;Hsc_gene_8007.t1	—	—	—	KAI3419128.1 hypothetical protein GPALN_006889 [Globodera pallida]	No	0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.945\|GO:0009987_0.883\|GO:0065007_0.791\|GO:0050789_0.776\|GO:0050896_0.776\|GO:0050794_0.751\|GO:0032501_0.748\|GO:0051716_0.740\|GO:0032502_0.737\|GO:0048856_0.737\|GO:0007275_0.723\|GO:0023052_0.711\|GO:0007154_0.710\|GO:0048869_0.706\|GO:0030154_0.705\|GO:0007165_0.701\|GO:0023051_0.695\|GO:0010646_0.694\|GO:0048583_0.692\|GO:0009653_0.689\|GO:0009966_0.688\|GO:0009888_0.685\|GO:0050793_0.684\|GO:0007166_0.683\|GO:0048646_0.679\|GO:0048729_0.674\|GO:0005575_0.597\|GO:0110165_0.588\|GO:0003674_0.562	IPR002110+184-213_188-213_224-253_224-256_257-286_257-289_281-354_290-319_290-322_323-353_357-386_363-443_365-389_390-419_390-422+\|IPR036770+139-263_187-443_264-294_295-451+\|IPR050745+187-251+	SM00248+184-213_224-253_257-286_290-319_323-353_357-386_390-419+	PF00023+188-213+Ankyrin_repeat\|PF12796+281-354_363-443+Ankyrin_repeats_(3_copies)	—	PTHR24189+187-251+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	417-468	1.000	1-416	5gik_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.751	52438.390	4.569	-20.500	26.282	9.188	47.009	52.991	11.538	14.744	50.427

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey	301.618	754.410	102.826	101.035	104.145	493.274	71.074	739.349	45.125	398.440	247.019

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-3.108	-3.037	—	—	2.257	-2.785	—	-3.233	—	—	—	—	—

No JSON data available for plots.

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