Hg_chrom6_TN10mRNA_12748
Organism: Heterodera glycines Gene Locus: chr6:8623354-8625668 Feature type: polypeptideProtein Sequence
Length: 325
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.608 | 0.93 | 1.231 | 0.424 | 1.436 | 1.657 | 0.806 | 0.615 | 1.162 | 0.873 | 1.305 | 1.267 | 1.709 | 0.592 | 0.628 | 1.231 | 0.858 | 1.026 | 0.947 | 0.905 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12005
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.519
|
0.095
|
0.021
|
0.564
|
0.354
|
0.228
|
0.103
|
0.050
|
0.120
|
0.260
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
MCB2141301
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.940|GO:0003674_0.850|GO:0032502_0.742|GO:0048856_0.737|GO:0003824_0.713|GO:0009653_0.686|GO:0016740_0.680|GO:0048646_0.678|GO:0140096_0.671|GO:0030435_0.670|GO:0030587_0.670|GO:0043934_0.670|GO:0051703_0.670|GO:0099120_0.670|GO:0016772_0.659|GO:0016301_0.655|GO:0016773_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+130-325+|IPR003877+195-325_198-323+|IPR013320+146-324+|IPR043136+122-325+|IPR044736+180-322+
|
SM00449+195-325+
|
PF00622+198-323+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-129
|
1.000
|
130-325
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
36762.250
|
4.740
|
-10.000
|
28.308
|
11.692
|
52.615
|
47.385
|
12.923
|
15.385
|
47.692
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
magenta
|
104.572
|
66.963
|
80.890
|
78.219
|
170.655
|
97.656
|
460.611
|
134.890
|
13.138
|
38.943
|
27.884
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.095
|
-0.792
|
2.245
|
— |
1.911
|
— | — | — | — | — |
No JSON data available for plots.