Hg_chrom6_TN10mRNA_12750
Organism: Heterodera glycines Gene Locus: chr6:8631649-8633697 Feature type: polypeptideProtein Sequence
Length: 128
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.181 | 0.545 | 0.852 | 0.539 | 1.042 | 0.401 | 0.837 | 0.391 | 0.694 | 1.795 | 0.473 | 3.217 | 0.651 | 0.901 | 1.116 | 1.451 | 0.768 | 1.539 | 1.202 | 0.46 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12007
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.922
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — |
22-51
|
0.947
|
— | — | — | — |
0.000
|
— | — |
0.056
|
0.184
|
0.021
|
0.097
|
0.178
|
0.599
|
0.405
|
0.021
|
0.545
|
0.163
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004452
|
2.000
|
1.000
|
Hsc_gene_1596.t1
|
Hsc_gene_13489.t1;Hsc_gene_1596.t1;Hsc_gene_5607.t1;Hsc_gene_8965.t1;Hsc_gene_8974.t1;Hsc_gene_9655.t1;Hsc_gene_9655.t2
|
— |
P46499.4 Uncharacterized protein F23F12.3 [Caenorhabditis elegans]
|
KAH7672957.1 major facilitator superfamily protein, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR036259+8-87_15-84+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
94-128
|
1.000
|
1-93
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
13772.040
|
4.809
|
-2.500
|
20.312
|
6.250
|
39.062
|
60.938
|
9.375
|
10.938
|
55.469
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
22.169
|
6.773
|
18.593
|
6.982
|
3.640
|
5.403
|
5.281
|
31.313
|
10.541
|
59.838
|
38.711
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.222
|
— |
-1.298
|
— | — | — |
2.429
|
-2.424
|
— | — | — | — | — |
No JSON data available for plots.