Hg_chrom6_TN10mRNA_12751
Organism: Heterodera glycines Gene Locus: chr6:8634737-8637951 Feature type: polypeptideProtein Sequence
Length: 411
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.622 | 1.415 | 1.15 | 0.503 | 1.541 | 1.872 | 0.695 | 0.852 | 1.514 | 1.085 | 1.475 | 1.002 | 2.028 | 0.421 | 0.348 | 1.182 | 0.678 | 0.59 | 0.561 | 0.644 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12008
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.841
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.515
|
0.073
|
0.006
|
0.692
|
0.265
|
0.214
|
0.106
|
0.040
|
0.148
|
0.236
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
— | — |
F4HYD7.1 Ran-binding protein M homolog [Arabidopsis thaliana]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAH9541125
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.637|GO:0008150_0.636|GO:0110165_0.633|GO:0005622_0.608|GO:0043226_0.564|GO:0016020_0.562|GO:0043229_0.558|GO:0005737_0.542|GO:0003674_0.535|GO:0043227_0.516
|
IPR001870+210-405+|IPR003877+277-404_280-402+|IPR013320+226-405+|IPR043136+202-411+|IPR044736+263-401+|IPR050618+189-402+
|
SM00449+277-404+
|
PF00622+280-402+SPRY_domain
|
— |
PTHR12864+189-402+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-54
|
1.000
|
55-411
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
46748.510
|
4.755
|
-13.500
|
28.710
|
11.922
|
54.501
|
45.499
|
13.139
|
15.572
|
43.552
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
61.789
|
29.392
|
59.960
|
74.844
|
126.825
|
47.975
|
91.757
|
25.329
|
6.040
|
94.766
|
56.740
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
1.213
|
0.428
|
0.732
|
-1.389
|
0.944
|
-1.030
|
2.000
|
— |
3.852
|
— | — |
6.705
|
No JSON data available for plots.