Hg_chrom6_TN10mRNA_12756
Organism: Heterodera glycines Gene Locus: chr6:8670023-8673201 Feature type: polypeptideProtein Sequence
Length: 292
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.677 | 1.195 | 0.872 | 0.354 | 0.913 | 0.878 | 0.815 | 1.199 | 1.37 | 1.157 | 1.349 | 2.417 | 1.522 | 0.527 | 1.538 | 0.832 | 1.011 | 1.038 | 0.527 | 0.604 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12013
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
33E05|AF5023922#tn7jg27227t1
|
Hsc_gene_25557
|
— | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
mitochondria
|
RKMGTAATNRQRRRTV,RRLAVRKMGTAATNRQRRR
|
1-31
|
0.993
|
46-66
|
0.996
|
— |
0.882
|
0.271
|
0.000
|
— |
0.606
|
0.071
|
0.034
|
0.397
|
0.202
|
0.061
|
0.075
|
0.019
|
0.098
|
0.436
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
Hsc_gene_25557.t1;Hsc_gene_25557.t2
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
MCX5666042
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR003877+199-283+|IPR013320+146-286+|IPR043136+210-292+|IPR044736+182-282+
|
— |
PF00622+199-283+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-292
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
33281.680
|
10.550
|
21.500
|
29.110
|
10.616
|
49.658
|
50.342
|
18.836
|
10.274
|
45.205
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
6521.927
|
46.577
|
3156.967
|
1006.048
|
162.210
|
8.421
|
8.299
|
108.555
|
35510.682
|
214.017
|
15341.159
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.854
|
4.296
|
-1.540
|
-2.665
|
-4.254
|
— |
3.598
|
-3.581
|
7.264
|
-4.958
|
— |
5.536
|
— |