Hg_chrom6_TN10mRNA_12761
Organism: Heterodera glycines Gene Locus: chr6:8707961-8712448 Feature type: polypeptideProtein Sequence
Length: 349
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.733 | 1.333 | 0.729 | 0.79 | 0.764 | 0.955 | 0.921 | 1.576 | 1.401 | 1.084 | 0.695 | 1.517 | 2.069 | 0.937 | 1.462 | 0.901 | 0.939 | 0.912 | 0.0 | 1.011 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12017
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
26-56
|
0.889
|
— | — | — | — |
0.000
|
— | — |
0.505
|
0.383
|
0.112
|
0.493
|
0.126
|
0.077
|
0.039
|
0.005
|
0.190
|
0.242
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001157
|
4.000
|
1.000
|
Hsc_gene_12474.t1
|
— | — |
Q5ZKD7.1 Putative helicase MOV-10 [Gallus gallus]
|
KAI3413943.1 Helicase MOV-10 [Globodera pallida]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004386
|
GO:0008150_0.818|GO:0005575_0.768|GO:0110165_0.767|GO:0009987_0.753|GO:0003674_0.680|GO:0005622_0.673|GO:0043226_0.628|GO:0043229_0.617|GO:0008152_0.597|GO:0016020_0.589|GO:0005737_0.554|GO:0043170_0.547|GO:0005488_0.540|GO:0065007_0.532|GO:0044238_0.519|GO:0050789_0.509|GO:0043227_0.501
|
IPR027417+140-298_205-293+|IPR041677+209-287+|IPR045055+70-300+
|
— |
PF13086+209-287+AAA_domain
|
— |
PTHR10887+70-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-349
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
39330.150
|
9.440
|
16.500
|
23.496
|
14.040
|
44.986
|
55.014
|
14.900
|
8.596
|
48.997
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
24.600
|
17.282
|
2.805
|
7.213
|
7.613
|
3.767
|
8.722
|
3.053
|
62.517
|
41.816
|
50.688
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.865
|
-1.397
|
1.483
|
— | — |
1.225
|
— |
1.663
|
— | — | — | — | — |
No JSON data available for plots.