Hg_chrom6_TN10mRNA_12762
Organism: Heterodera glycines Gene Locus: chr6:8733223-8735485 Feature type: polypeptideProtein Sequence
Length: 179
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.585 | 1.429 | 1.016 | 1.348 | 1.117 | 0.286 | 0.665 | 0.838 | 0.993 | 0.981 | 1.016 | 2.3 | 2.638 | 0.752 | 1.368 | 1.038 | 0.824 | 0.762 | 0.859 | 0.986 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12018
|
— | — |
0.667
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.665
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus|extracellular
|
— |
RKIRTKMPKLKLEKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.508
|
0.261
|
0.035
|
0.494
|
0.158
|
0.083
|
0.064
|
0.014
|
0.290
|
0.637
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010835
|
2.000
|
0.000
|
0.000
|
— | — | — |
KAJ8593586.1 SPRY-domain-containing protein [Rhizopogon salebrosus TDB-379]
|
CAD6588184
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.934|GO:0009987_0.669|GO:0065007_0.616|GO:0008152_0.609|GO:0050789_0.602|GO:0050794_0.590|GO:0044238_0.589|GO:0019222_0.530|GO:0005575_0.528|GO:0048519_0.528|GO:0110165_0.525|GO:0080090_0.520|GO:0048523_0.517|GO:0032502_0.506|GO:0048856_0.506
|
IPR001870+1-171+|IPR003877+37-159+|IPR013320+36-171+|IPR043136+6-178+|IPR044736+34-166+
|
— |
PF00622+37-159+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-179
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.780
|
20747.810
|
7.884
|
3.500
|
27.374
|
15.642
|
46.927
|
53.073
|
15.084
|
12.291
|
47.486
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
57.697
|
0.157
|
4.654
|
8.847
|
6.122
|
0.257
|
3.646
|
49.056
|
6.953
|
219.932
|
128.655
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.691
|
5.713
|
1.026
|
— |
-4.588
|
3.847
|
7.484
|
-3.611
|
-5.153
|
— |
-5.030
|
— | — |
No JSON data available for plots.