Hg_chrom6_TN10mRNA_12763
Organism: Heterodera glycines Gene Locus: chr6:8737235-8739825 Feature type: polypeptideProtein Sequence
Length: 284
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 2.211 | 1.216 | 1.093 | 1.115 | 0.993 | 0.796 | 0.88 | 1.408 | 0.761 | 1.12 | 1.657 | 1.663 | 0.474 | 0.647 | 1.056 | 0.924 | 0.747 | 0.813 | 0.725 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12019
|
— | — |
0.778
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — |
1-24
|
0.986
|
0.998
|
0.000
|
0.000
|
0.684
|
0.153
|
0.007
|
0.476
|
0.182
|
0.113
|
0.073
|
0.004
|
0.128
|
0.239
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010835
|
2.000
|
0.000
|
0.000
|
— | — | — |
KAK9318501.1 concanavalin A-like lectin/glucanase domain-containing protein [Lipomyces starkeyi];KAK9347676.1 concanavalin A-like lectin/glucanase domain-containing protein [Lipomyces starkeyi]
|
KAI2601727
|
0.550
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.942|GO:0009987_0.558|GO:0065007_0.509
|
IPR001870+82-284+|IPR003877+150-271+|IPR013320+99-274+|IPR043136+77-281+|IPR044736+134-275+
|
— |
PF00622+150-271+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-88
|
1.000
|
89-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
31836.670
|
5.054
|
-5.500
|
25.704
|
11.268
|
52.113
|
47.887
|
12.324
|
13.380
|
52.817
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
30.724
|
0.154
|
7.780
|
20.402
|
7.294
|
1.976
|
2.021
|
9.148
|
92.174
|
46.995
|
66.357
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.438
|
6.922
|
1.498
|
-1.518
|
-1.867
|
— | — |
-2.033
|
— | — | — | — | — |