Hg_chrom6_TN10mRNA_12764
Organism: Heterodera glycines Gene Locus: chr6:8742179-8743943 Feature type: polypeptideProtein Sequence
Length: 340
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.718 | 1.573 | 0.856 | 0.71 | 1.029 | 1.584 | 0.7 | 0.735 | 1.438 | 1.272 | 0.936 | 1.038 | 1.797 | 0.679 | 1.08 | 1.092 | 0.82 | 0.713 | 0.905 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12020
|
— | — |
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.570
|
0.190
|
0.020
|
0.602
|
0.186
|
0.101
|
0.062
|
0.023
|
0.070
|
0.278
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002352
|
2.000
|
2.000
|
Hsc_gene_8978.t1;Hsc_gene_8978.t2
|
— | — |
P58545.2 BTB/POZ domain-containing protein 3 [Mus musculus]
|
KAI3417397.1 BTB (POZ) domain containing 6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.732|GO:0110165_0.716|GO:0005622_0.676|GO:0005737_0.620|GO:0043226_0.619|GO:0043229_0.606
|
IPR000210+13-71+|IPR008974+173-318+|IPR011333+1-74_15-71+
|
— |
PF00651+13-71+BTB/POZ_domain
|
— |
PTHR45774+94-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
332-340
|
1.000
|
1-331
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
38676.990
|
7.896
|
4.500
|
23.824
|
12.059
|
49.412
|
50.588
|
12.941
|
10.882
|
46.471
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
20.802
|
3.853
|
3.310
|
7.130
|
4.786
|
2.257
|
12.568
|
10.434
|
10.685
|
66.366
|
42.503
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
1.224
|
— | — |
2.486
|
2.089
|
— | — | — | — | — | — |
No JSON data available for plots.