Hg_chrom6_TN10mRNA_12765
Organism: Heterodera glycines Gene Locus: chr6:8745570-8747075 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.391 | 0.932 | 0.884 | 0.997 | 0.438 | 0.916 | 1.282 | 1.425 | 0.404 | 1.489 | 1.257 | 2.612 | 0.493 | 1.134 | 1.404 | 0.701 | 0.648 | 0.986 | 0.88 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12021
|
— | — |
0.778
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKQANPDEEKHNKKAKT,RKTENHWDATACDKRLRI,RKDEITANFGSEEFKFKPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.837
|
0.069
|
0.031
|
0.388
|
0.064
|
0.023
|
0.009
|
0.009
|
0.029
|
0.398
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000123
|
1.000
|
13.000
|
Hsc_gene_11556.t1;Hsc_gene_17495.t1;Hsc_gene_17495.t2;Hsc_gene_17495.t3;Hsc_gene_22918.t1;Hsc_gene_23902.t1;Hsc_gene_23902.t2;Hsc_gene_24085.t1;Hsc_gene_24085.t2;Hsc_gene_24086.t1;Hsc_gene_9680.t1;Hsc_gene_9695.t1;Hsc_gene_9699.t1
|
— | — |
F4HYD7.1 Ran-binding protein M homolog [Arabidopsis thaliana]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.742|GO:0110165_0.742|GO:0008150_0.732|GO:0005622_0.702|GO:0005737_0.641|GO:0009987_0.605|GO:0016020_0.542|GO:0043226_0.542|GO:0043229_0.534
|
IPR001870+35-227+|IPR003877+100-226_103-224+|IPR013320+53-229+|IPR043136+30-234+|IPR044736+87-223+|IPR050618+29-229+
|
SM00449+100-226+
|
PF00622+103-224+SPRY_domain
|
— |
PTHR12864+29-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-234
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.881
|
26573.090
|
9.655
|
13.000
|
29.060
|
16.239
|
50.855
|
49.145
|
17.949
|
11.111
|
49.145
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
25.659
|
1.356
|
8.228
|
6.187
|
2.869
|
4.304
|
4.857
|
2.786
|
77.405
|
42.736
|
57.594
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.359
|
2.044
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.