Hg_chrom6_TN10mRNA_12768
Organism: Heterodera glycines Gene Locus: chr6:8756194-8757363 Feature type: polypeptideProtein Sequence
Length: 209
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.445 | 1.113 | 0.696 | 0.165 | 1.037 | 1.472 | 0.456 | 2.153 | 1.063 | 1.552 | 1.232 | 1.126 | 1.861 | 0.736 | 1.269 | 1.709 | 0.628 | 0.507 | 1.84 | 0.704 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12024
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKNQAEFSGLGRLMKK,KRPLHNGTHRLIKQRTWKR
|
26-47
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.580
|
0.247
|
0.033
|
0.314
|
0.119
|
0.105
|
0.124
|
0.014
|
0.042
|
0.274
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001215
|
4.000
|
1.000
|
Hsc_gene_21162.t1
|
— | — | — |
KAH7708893.1 zinc finger BED domain-containing protein 4-like [Aphelenchus avenae]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.914|GO:0110165_0.913|GO:0005622_0.892|GO:0043226_0.872|GO:0016020_0.862|GO:0043229_0.857|GO:0043227_0.834|GO:0043231_0.834|GO:0005737_0.815|GO:0003674_0.804|GO:0005488_0.764|GO:0005515_0.735|GO:0005634_0.693|GO:0042802_0.665|GO:0031974_0.583|GO:0043233_0.583|GO:0070013_0.581|GO:0031981_0.578|GO:0005654_0.565
|
IPR008906+122-202+|IPR012337+52-201+|IPR052035+96-209+
|
— |
PF05699+122-202+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+96-209+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25
|
1.000
|
26-209
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
24503.950
|
10.279
|
13.500
|
28.708
|
15.789
|
55.024
|
44.976
|
18.660
|
10.048
|
39.713
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
cyan
|
3.616
|
3.505
|
3.634
|
5.862
|
7.020
|
3.237
|
2.019
|
1.387
|
2.570
|
3.895
|
3.327
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.