Hg_chrom6_TN10mRNA_12771
Organism: Heterodera glycines Gene Locus: chr6:8778759-8782322 Feature type: polypeptideProtein Sequence
Length: 429
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.515 | 1.247 | 0.932 | 0.161 | 1.943 | 2.57 | 0.722 | 0.466 | 1.191 | 1.071 | 1.872 | 1.645 | 1.748 | 0.224 | 0.761 | 0.566 | 0.764 | 0.671 | 0.717 | 0.686 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12027
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.892
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKMLQNENGKRRNDR,RKLKNEIEKIQEKFDKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.473
|
0.072
|
0.013
|
0.607
|
0.333
|
0.137
|
0.084
|
0.019
|
0.198
|
0.446
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.948|GO:0003674_0.829|GO:0032502_0.754|GO:0048856_0.754|GO:0003824_0.691|GO:0009653_0.689|GO:0048646_0.677|GO:0030435_0.675|GO:0043934_0.675|GO:0051703_0.675|GO:0030587_0.674|GO:0099120_0.674|GO:0140096_0.673|GO:0016740_0.671|GO:0016772_0.660|GO:0016301_0.656|GO:0016773_0.655|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+227-423+|IPR003877+294-422_297-420+|IPR013320+226-423+|IPR043136+220-429+|IPR044736+279-419+
|
SM00449+294-422+
|
PF00622+297-420+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-202
|
1.000
|
203-429
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
50266.980
|
6.233
|
-1.000
|
33.800
|
10.490
|
57.809
|
42.191
|
17.016
|
16.783
|
35.664
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
49.160
|
20.956
|
63.084
|
89.177
|
159.902
|
57.599
|
119.829
|
21.016
|
7.384
|
10.199
|
8.993
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.356
|
1.953
|
0.611
|
0.811
|
-1.459
|
1.065
|
-1.561
|
2.654
|
— |
3.834
|
3.945
|
— | — |
No JSON data available for plots.