Hg_chrom6_TN10mRNA_12773
Organism: Heterodera glycines Gene Locus: chr6:8789867-8793682 Feature type: polypeptideProtein Sequence
Length: 458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.533 | 1.574 | 0.834 | 0.301 | 1.929 | 2.743 | 0.546 | 0.546 | 1.116 | 1.151 | 1.952 | 1.284 | 1.395 | 0.168 | 0.802 | 0.655 | 0.823 | 0.595 | 0.504 | 0.771 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12029
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.335
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKMLQNENDKRRNDR,RKLKNEIEKIQEKFDKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.490
|
0.080
|
0.014
|
0.591
|
0.318
|
0.177
|
0.120
|
0.010
|
0.192
|
0.426
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004455
|
1.000
|
2.000
|
Hsc_gene_24066.t1;Hsc_gene_24066.t2
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
MCD7449231
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.950|GO:0003674_0.820|GO:0032502_0.765|GO:0048856_0.765|GO:0009653_0.693|GO:0003824_0.681|GO:0048646_0.679|GO:0051703_0.676|GO:0030435_0.675|GO:0030587_0.675|GO:0043934_0.675|GO:0099120_0.675|GO:0140096_0.672|GO:0016740_0.665|GO:0016772_0.658|GO:0016301_0.655|GO:0016773_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+259-452+|IPR003877+327-451_330-449+|IPR013320+276-452+|IPR043136+253-458+|IPR044736+313-448+
|
SM00449+327-451+
|
PF00622+330-449+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-212
|
1.000
|
213-458
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
53812.810
|
8.383
|
5.500
|
34.061
|
9.389
|
61.135
|
38.865
|
17.904
|
16.157
|
35.808
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
121.822
|
69.656
|
127.428
|
159.457
|
234.149
|
100.477
|
187.240
|
29.751
|
5.585
|
188.224
|
109.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
1.058
|
0.434
|
0.522
|
-1.206
|
0.904
|
-1.864
|
2.792
|
-5.203
|
5.093
|
— | — | — |
No JSON data available for plots.