Hg_chrom6_TN10mRNA_12779
Organism: Heterodera glycines Gene Locus: chr6:8871926-8876281 Feature type: polypeptideProtein Sequence
Length: 458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.584 | 1.117 | 0.913 | 0.301 | 1.783 | 2.351 | 0.806 | 0.437 | 1.164 | 1.121 | 1.588 | 1.413 | 1.638 | 0.42 | 0.579 | 1.029 | 0.787 | 0.695 | 0.504 | 0.642 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12035
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.559
|
0.083
|
0.020
|
0.580
|
0.343
|
0.190
|
0.091
|
0.025
|
0.117
|
0.159
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
SAM07272
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.945|GO:0003674_0.835|GO:0032502_0.758|GO:0048856_0.758|GO:0009653_0.691|GO:0003824_0.690|GO:0048646_0.679|GO:0030435_0.674|GO:0043934_0.674|GO:0051703_0.674|GO:0016740_0.672|GO:0140096_0.672|GO:0030587_0.670|GO:0099120_0.670|GO:0016772_0.659|GO:0016301_0.656|GO:0016773_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+258-452+|IPR003877+324-451_327-449+|IPR013320+274-452+|IPR043136+250-458+|IPR044736+310-448+
|
SM00449+324-451+
|
PF00622+327-449+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-224
|
1.000
|
225-458
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.513
|
52204.830
|
5.005
|
-9.000
|
29.913
|
9.607
|
55.895
|
44.105
|
14.192
|
15.721
|
41.266
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
salmon
|
46.436
|
14.877
|
39.808
|
40.714
|
32.443
|
16.609
|
55.071
|
9.258
|
38.718
|
95.827
|
71.352
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.187
|
1.313
|
— | — |
-0.950
|
1.738
|
-0.944
|
2.713
|
— | — | — | — | — |
No JSON data available for plots.