SCN Proteipedia

Hg_chrom6_TN10mRNA_12784

Organism: Heterodera glycines Gene Locus: chr6:9031830-9038561 Feature type: polypeptide

Protein Sequence

Length: 1,956

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.797	0.999	1.088	0.652	0.937	1.508	0.761	1.406	1.329	1.126	0.868	1.353	1.179	1.268	1.273	0.781	0.796	0.891	1.14	0.932	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12040	—	—	1.111	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	—	—

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRS,RKPTKR,RRTDSGMPPHRLRLK	—	—	17-40	0.991	—	—	0.000	—	—	0.804	0.204	0.018	0.312	0.089	0.047	0.028	0.005	0.070	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000022	1.000	34.000	Hsc_gene_1047.t1;Hsc_gene_10508.t1;Hsc_gene_10509.t1;Hsc_gene_11187.t1;Hsc_gene_11234.t1;Hsc_gene_15190.t1;Hsc_gene_15855.t1;Hsc_gene_15856.t1;Hsc_gene_16911.t1;Hsc_gene_16991.t1;Hsc_gene_17799.t1;Hsc_gene_17800.t1;Hsc_gene_17801.t1;Hsc_gene_17967.t1;Hsc_gene_19564.t1;Hsc_gene_19565.t1;Hsc_gene_22035.t1;Hsc_gene_22036.t1;Hsc_gene_22216.t1;Hsc_gene_22413.t1;Hsc_gene_22903.t1;Hsc_gene_22950.t1;Hsc_gene_22951.t1;Hsc_gene_24818.t1;Hsc_gene_26457.t1;Hsc_gene_4108.t1;Hsc_gene_511.t1;Hsc_gene_5199.t1;Hsc_gene_5201.t1;Hsc_gene_5626.t1;Hsc_gene_9612.t1;Hsc_gene_9804.t1;Hsc_gene_9804.t2;Hsc_gene_9805.t1	Hsc_gene_10508.t1;Hsc_gene_16991.t1;Hsc_gene_26457.t1;Hsc_gene_5201.t1;Hsc_gene_9612.t1	—	Q57YG0.1 ATP-dependent DNA helicase PIF7 [Trypanosoma brucei brucei TREU927]	CAD2181655.1 unnamed protein product [Meloidogyne enterolobii]	No	0.030

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000723\|GO:0003678\|GO:0006281	GO:0003674_0.897\|GO:0005575_0.775\|GO:0110165_0.771\|GO:0008150_0.768\|GO:0005488_0.744\|GO:0009987_0.714\|GO:0005622_0.694\|GO:0016020_0.678\|GO:0043226_0.638\|GO:0043229_0.614\|GO:0003824_0.586\|GO:0043227_0.579\|GO:0071840_0.560\|GO:0016043_0.558\|GO:0043231_0.555\|GO:0008152_0.540\|GO:0097159_0.521\|GO:0044238_0.519\|GO:0016787_0.511\|GO:0044237_0.509\|GO:0009058_0.503	IPR010285+1485-1687+\|IPR025476+815-1017+\|IPR027417+1481-1646_1483-1667_1627-1934+\|IPR038765+131-299+\|IPR049163+1795-1832+	—	PF05970+1485-1687+PIF1-like_helicase\|PF14214+815-1017+Helitron_helicase-like_domain_at_N-terminus\|PF21530+1795-1832+DNA_helicase_Pif1,_2B_domain	—	PTHR45786+472-983+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-68;383-429;578-720	3.000	69-382;430-577;721-1956	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.734	221602.860	7.923	34.500	26.380	11.708	46.881	53.119	14.775	11.605	48.211

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	—	darkmagenta	231.543	1.519	7.933	7.213	1.771	1.376	0.609	2.343	163.264	882.018	573.980

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.151	2.105	—	-2.042	—	—	—	—	-2.572	-4.303	-8.768	—	—

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