Hg_chrom6_TN10mRNA_12785
Organism: Heterodera glycines Gene Locus: chr6:9039830-9043110 Feature type: polypeptideProtein Sequence
Length: 262
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.355 | 0.799 | 1.457 | 0.79 | 1.399 | 1.174 | 0.182 | 1.145 | 1.272 | 2.063 | 0.463 | 1.572 | 1.378 | 1.174 | 1.402 | 0.981 | 0.876 | 0.81 | 0.587 | 1.01 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12041
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.877
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.544
|
0.484
|
0.009
|
0.578
|
0.226
|
0.161
|
0.148
|
0.129
|
0.130
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002047
|
3.000
|
1.000
|
Hsc_gene_21355.t1
|
— | — |
Q5XIK8.1 CTD small phosphatase-like protein 2 [Rattus norvegicus]
|
KAI3413353.1 CTD small phosphatase-like protein 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016791
|
GO:0008150_0.886|GO:0005575_0.798|GO:0110165_0.790|GO:0009987_0.752|GO:0065007_0.718|GO:0016020_0.694|GO:0005622_0.688|GO:0050789_0.676|GO:0043226_0.612|GO:0050794_0.598|GO:0043229_0.570|GO:0043227_0.557|GO:0043231_0.518|GO:0003674_0.515
|
IPR004274+79-238_82-226_85-240+|IPR011948+85-240+|IPR023214+63-244+|IPR036412+72-241+|IPR050365+38-240+
|
SM00577+82-226+
|
PF03031+85-240+NLI_interacting_factor-like_phosphatase
|
G3DSA:3.40.50.1000:FF:000015+72-244+CTD_small_phosphatase-like_protein_2
|
PTHR12210+38-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-37
|
1.000
|
38-262
|
2hhl_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
30736.230
|
4.475
|
-14.000
|
28.626
|
11.450
|
48.855
|
51.145
|
12.214
|
16.412
|
41.985
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
15.241
|
13.826
|
13.659
|
10.398
|
5.237
|
11.156
|
13.799
|
10.888
|
20.783
|
21.481
|
21.182
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-1.015
|
1.101
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.