Hg_chrom6_TN10mRNA_12786
Organism: Heterodera glycines Gene Locus: chr6:9376721-9378834 Feature type: polypeptideProtein Sequence
Length: 316
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.368 | 0.883 | 0.518 | 1.746 | 0.475 | 0.73 | 0.716 | 1.424 | 1.266 | 1.155 | 0.623 | 1.117 | 3.252 | 0.913 | 1.227 | 1.311 | 0.726 | 1.343 | 2.921 | 0.465 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12042
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
5-25
|
0.822
|
— | — | — | — |
0.000
|
— | — |
0.036
|
0.078
|
0.003
|
0.218
|
0.547
|
0.339
|
0.661
|
0.000
|
0.492
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004430
|
2.000
|
1.000
|
Hsc_gene_10547.t1
|
— | — |
P59267.1 Palmitoyltransferase ZDHHC2 [Mus musculus]
|
KAH7731840.1 Zinc finger DHHC domain containing protein 2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016409
|
GO:0008150_0.893|GO:0005575_0.874|GO:0110165_0.871|GO:0016020_0.834|GO:0009987_0.832|GO:0071944_0.762|GO:0005886_0.751|GO:0005622_0.708|GO:0043226_0.699|GO:0043227_0.667|GO:0003674_0.661|GO:0043229_0.661|GO:0005737_0.659|GO:0043231_0.637|GO:0005773_0.603|GO:0012505_0.554|GO:0008152_0.519|GO:0044237_0.501
|
IPR001594+128-241+
|
— |
PF01529+128-241+DHHC_palmitoyltransferase
|
— |
PTHR12246+16-241+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-316
|
8hfc_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
36599.870
|
9.041
|
18.500
|
18.671
|
19.937
|
38.924
|
61.076
|
12.975
|
5.696
|
48.101
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
16.320
|
7.928
|
11.287
|
7.632
|
8.300
|
9.246
|
37.577
|
45.850
|
12.953
|
13.755
|
13.411
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.038
|
2.205
|
— | — | — | — | — | — |
No JSON data available for plots.