Hg_chrom6_TN10mRNA_12788
Organism: Heterodera glycines Gene Locus: chr6:9387068-9389912 Feature type: polypeptideProtein Sequence
Length: 400
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.523 | 1.105 | 1.045 | 0.345 | 2.0 | 2.564 | 0.774 | 0.625 | 1.444 | 0.98 | 1.742 | 1.176 | 1.458 | 0.24 | 0.714 | 0.893 | 0.656 | 0.644 | 0.577 | 0.515 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12044
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.538
|
0.125
|
0.012
|
0.477
|
0.240
|
0.104
|
0.048
|
0.039
|
0.138
|
0.309
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
-0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.942|GO:0003674_0.831|GO:0032502_0.746|GO:0048856_0.744|GO:0009653_0.689|GO:0003824_0.688|GO:0048646_0.678|GO:0030435_0.674|GO:0043934_0.674|GO:0051703_0.674|GO:0030587_0.670|GO:0099120_0.670|GO:0140096_0.669|GO:0016740_0.668|GO:0016772_0.657|GO:0016301_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650|GO:0016773_0.650
|
IPR003877+311-390+|IPR013320+247-394+|IPR043136+308-400+|IPR044736+281-390+
|
— |
PF00622+311-390+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-189
|
1.000
|
190-400
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
46129.820
|
5.066
|
-8.500
|
34.000
|
9.000
|
59.000
|
41.000
|
16.250
|
17.750
|
38.250
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
440.245
|
468.452
|
592.163
|
647.667
|
623.404
|
582.530
|
301.024
|
531.954
|
247.267
|
335.423
|
297.642
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.330
|
0.238
|
— | — |
-0.943
|
— |
-0.678
|
— | — | — | — | — |
No JSON data available for plots.