Hg_chrom6_TN10mRNA_12794
Organism: Heterodera glycines Gene Locus: chr6:9603185-9605181 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.473 | 1.284 | 0.951 | 0.401 | 1.502 | 2.534 | 0.831 | 1.308 | 1.486 | 0.982 | 1.586 | 1.539 | 1.696 | 0.224 | 0.653 | 0.664 | 0.62 | 0.793 | 0.447 | 1.111 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12050
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKMLQNENDKRRNDR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.492
|
0.075
|
0.008
|
0.540
|
0.413
|
0.139
|
0.071
|
0.034
|
0.137
|
0.352
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.946|GO:0003674_0.856|GO:0032502_0.744|GO:0048856_0.744|GO:0003824_0.713|GO:0009653_0.689|GO:0016740_0.679|GO:0048646_0.678|GO:0030435_0.674|GO:0043934_0.674|GO:0051703_0.674|GO:0140096_0.672|GO:0030587_0.670|GO:0099120_0.670|GO:0016772_0.661|GO:0016301_0.656|GO:0016773_0.655|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+143-338+|IPR003877+208-337_211-335+|IPR013320+149-338+|IPR043136+137-344+|IPR044736+194-334+
|
SM00449+208-337+
|
PF00622+211-335+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-120
|
1.000
|
121-344
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
40037.390
|
6.965
|
2.500
|
30.523
|
13.081
|
54.360
|
45.640
|
16.279
|
14.244
|
37.791
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
10.329
|
5.924
|
12.405
|
11.875
|
12.100
|
8.532
|
16.615
|
7.857
|
21.297
|
0.976
|
9.685
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.964
|
— |
1.216
|
— | — | — | — | — |
No JSON data available for plots.