Hg_chrom6_TN10mRNA_12796
Organism: Heterodera glycines Gene Locus: chr6:9717792-9718711 Feature type: polypeptideProtein Sequence
Length: 179
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.585 | 1.299 | 1.219 | 0.0 | 0.559 | 0.573 | 1.064 | 0.838 | 1.614 | 0.83 | 1.27 | 1.972 | 2.328 | 0.645 | 0.57 | 1.117 | 0.916 | 0.931 | 0.859 | 1.807 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12052
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.497
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — |
4-26
|
0.923
|
— | — | — | — |
0.000
|
— | — |
0.613
|
0.110
|
0.015
|
0.603
|
0.363
|
0.134
|
0.080
|
0.121
|
0.134
|
0.353
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000905
|
4.000
|
2.000
|
Hsc_gene_17471.t1;Hsc_gene_17471.t2
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
XP_056826000
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.701|GO:0005575_0.697|GO:0110165_0.697|GO:0005622_0.645|GO:0005737_0.639|GO:0016020_0.616|GO:0043226_0.610|GO:0043229_0.605|GO:0043227_0.586|GO:0043231_0.586
|
IPR001870+1-173+|IPR003877+44-172_47-170+|IPR013320+11-173+|IPR043136+7-179+|IPR044736+30-169+
|
SM00449+44-172+
|
PF00622+47-170+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-179
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.849
|
20276.140
|
8.998
|
3.500
|
22.905
|
17.318
|
44.134
|
55.866
|
12.849
|
10.056
|
49.162
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
28.509
|
10.020
|
28.474
|
13.307
|
47.679
|
28.225
|
19.335
|
45.281
|
12.884
|
42.943
|
30.060
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.276
|
— |
-0.987
|
1.808
|
-0.742
|
— | — |
-1.089
|
— | — | — | — | — |
No JSON data available for plots.