Hg_chrom6_TN10mRNA_12797
Organism: Heterodera glycines Gene Locus: chr6:9717792-9723726 Feature type: polypeptideProtein Sequence
Length: 445
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.523 | 1.568 | 0.531 | 0.775 | 2.36 | 0.691 | 0.749 | 1.011 | 1.398 | 1.032 | 1.6 | 1.983 | 1.373 | 0.259 | 1.422 | 0.514 | 0.589 | 0.885 | 1.556 | 0.661 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12052
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.497
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
RKRMRKRRRRKEKKF,KRKEEKWKRMWKRKEEENWRKRMRKRRRRKEKK
|
4-26
|
0.923
|
— | — | — | — |
0.000
|
— | — |
0.390
|
0.036
|
0.009
|
0.262
|
0.527
|
0.140
|
0.143
|
0.036
|
0.352
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000905
|
4.000
|
2.000
|
Hsc_gene_17471.t1;Hsc_gene_17471.t2
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
XP_056788473
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR001870+1-174+|IPR003877+47-132+|IPR013087+363-385_363-390_365-385_391-413_391-418_393-413+|IPR013320+11-136+|IPR036236+360-409_389-438+|IPR043136+8-195+|IPR044736+30-135+
|
SM00355+363-385_391-413+
|
PF00096+363-385+Zinc_finger,_C2H2_type|PF00622+47-132+SPRY_domain
|
— |
PTHR14003+265-438+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
274-351
|
2.000
|
1-273;352-445
|
2lvu_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
52460.220
|
7.803
|
6.500
|
36.629
|
11.236
|
53.258
|
46.742
|
19.551
|
17.079
|
37.079
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
28.509
|
10.020
|
28.474
|
13.307
|
47.679
|
28.225
|
19.335
|
45.281
|
12.884
|
42.943
|
30.060
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.276
|
— |
-0.987
|
1.808
|
-0.742
|
— | — |
-1.089
|
— | — | — | — | — |
No JSON data available for plots.