Hg_chrom6_TN10mRNA_12799
Organism: Heterodera glycines Gene Locus: chr6:9737341-9739132 Feature type: polypeptideProtein Sequence
Length: 220
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 0.74 | 0.909 | 1.097 | 0.606 | 0.583 | 0.758 | 0.682 | 1.515 | 2.027 | 0.344 | 1.604 | 1.515 | 0.524 | 0.835 | 1.364 | 0.671 | 1.584 | 1.399 | 0.668 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12054
|
— | — |
1.889
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
3.000
|
1.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.668
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
49-69
|
0.918
|
— | — | — | — |
0.000
|
— | — |
0.054
|
0.157
|
0.007
|
0.106
|
0.178
|
0.455
|
0.432
|
0.385
|
0.616
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010840
|
1.000
|
1.000
|
Hsc_gene_8974.t1
|
Hsc_gene_13489.t1;Hsc_gene_1596.t1;Hsc_gene_5607.t1;Hsc_gene_8965.t1;Hsc_gene_8974.t1;Hsc_gene_9655.t1;Hsc_gene_9655.t2;Hsc_gene_9665.t1;Hsc_gene_9717.t1
|
— |
O57379.1 Solute carrier family 22 member 6 [Pseudopleuronectes americanus]
|
KAH7672957.1 major facilitator superfamily protein, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.836|GO:0110165_0.834|GO:0008150_0.814|GO:0005886_0.813|GO:0016020_0.813|GO:0071944_0.813|GO:0009987_0.771|GO:0006810_0.619|GO:0051179_0.619|GO:0051234_0.619|GO:0003674_0.599|GO:0055085_0.563|GO:0005215_0.517|GO:0022857_0.517
|
IPR036259+1-180_28-177+
|
— | — | — |
PTHR24064+4-176+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
189-220
|
1.000
|
1-188
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
24090.310
|
4.914
|
-3.500
|
16.364
|
10.909
|
35.455
|
64.545
|
7.727
|
8.636
|
52.273
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
32.650
|
33.765
|
140.997
|
30.313
|
17.122
|
35.837
|
16.444
|
106.437
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.830
|
— |
-2.106
|
-0.855
|
1.080
|
-1.114
|
1.466
|
-2.551
|
— |
5.779
|
— | — | — |
No JSON data available for plots.