SCN Proteipedia

Hg_chrom6_TN10mRNA_12800

Organism: Heterodera glycines Gene Locus: chr6:9740724-9742659 Feature type: polypeptide

Protein Sequence

Length: 497

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.772	1.544	0.951	1.318	0.939	0.619	0.527	1.107	1.52	1.278	1.219	1.42	1.453	0.89	1.027	0.977	0.759	0.945	0.774	0.769	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12055	—	—	1.222	1.000	1.000	1.000	1.000	1.000	1.000	2.000	2.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	—	—

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	nucleus	—	RKAPSRVAFYRKKLP	—	—	—	—	—	—	0.000	—	—	0.787	0.150	0.045	0.411	0.222	0.109	0.074	0.087	0.159	0.082

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003497	2.000	1.000	Hsc_gene_1350.t2	Hsc_gene_1350.t1;Hsc_gene_1350.t2	—	—	KAF7640104.1 CGG triplet repeat-binding protein 1 [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003690\|GO:0005634\|GO:0006357\|GO:0046983	GO:0008150_0.949\|GO:0009987_0.880\|GO:0005575_0.875\|GO:0110165_0.866\|GO:0003674_0.865\|GO:0065007_0.818\|GO:0008152_0.811\|GO:0005622_0.803\|GO:0050789_0.798\|GO:0044238_0.790\|GO:0016020_0.780\|GO:0050794_0.776\|GO:0044237_0.775\|GO:0009058_0.768\|GO:0005488_0.765\|GO:0043170_0.756\|GO:0044249_0.753\|GO:0043226_0.748\|GO:0071840_0.740\|GO:0043229_0.738\|GO:0009059_0.732\|GO:0016043_0.731\|GO:0019222_0.723\|GO:0005515_0.721\|GO:0048519_0.721\|GO:0006139_0.720\|GO:0010467_0.716\|GO:0031323_0.715\|GO:0043227_0.712\|GO:0043231_0.712\|GO:0060255_0.712\|GO:0048523_0.710\|GO:0080090_0.708\|GO:0034654_0.707\|GO:0090304_0.704\|GO:0009889_0.703\|GO:0031326_0.703\|GO:0141187_0.700\|GO:0010468_0.699\|GO:0010556_0.699\|GO:0016070_0.699\|GO:0032774_0.695\|GO:0009892_0.688\|GO:0019219_0.687\|GO:0097159_0.687\|GO:0010605_0.685\|GO:0006351_0.684\|GO:0031324_0.684\|GO:0051252_0.684\|GO:0006355_0.682\|GO:2001141_0.682\|GO:0009890_0.680\|GO:0010558_0.680\|GO:0031327_0.680\|GO:0006366_0.678\|GO:0006357_0.676\|GO:0006325_0.675\|GO:0006338_0.675\|GO:0040029_0.675\|GO:0045934_0.675\|GO:0051253_0.675\|GO:0045892_0.674\|GO:1902679_0.674\|GO:0000122_0.670\|GO:0003676_0.668\|GO:0042802_0.666\|GO:0003677_0.658\|GO:0003690_0.656\|GO:0008134_0.650\|GO:0140297_0.650\|GO:0005634_0.608\|GO:0031974_0.569\|GO:0043233_0.569\|GO:0070013_0.569\|GO:0031981_0.563\|GO:0005654_0.554	IPR007021+119-282+\|IPR008906+453-490+\|IPR012337+145-495+\|IPR033375+1-142+	—	PF04937+119-282+Protein_of_unknown_function_(DUF_659)\|PF05699+453-490+hAT_family_C-terminal_dimerisation_region	—	PTHR32344+1-142+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-497	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.825	56241.170	8.514	16.500	26.157	11.066	46.680	53.320	15.292	10.865	49.095

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	—	grey	45.599	1.365	4.502	3.476	2.500	2.111	0.201	1.934	250.667	5.460	110.549

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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