Hg_chrom6_TN10mRNA_12802
Organism: Heterodera glycines Gene Locus: chr6:9762372-9763801 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.656 | 1.431 | 1.305 | 0.354 | 0.769 | 1.052 | 1.099 | 1.538 | 1.595 | 0.832 | 1.166 | 0.905 | 2.422 | 0.394 | 0.314 | 0.952 | 0.673 | 0.855 | 1.578 | 1.659 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12057
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.448
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.685
|
0.098
|
0.012
|
0.583
|
0.288
|
0.113
|
0.032
|
0.084
|
0.120
|
0.314
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.918|GO:0003674_0.861|GO:0003824_0.809|GO:0032502_0.699|GO:0048856_0.699|GO:0016740_0.696|GO:0009653_0.677|GO:0048646_0.674|GO:0030435_0.670|GO:0030587_0.670|GO:0043934_0.670|GO:0051703_0.670|GO:0099120_0.670|GO:0140096_0.667|GO:0016772_0.660|GO:0016301_0.655|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650|GO:0016773_0.650
|
IPR001870+1-189+|IPR003877+60-188_63-186+|IPR013320+4-189+|IPR043136+1-195+|IPR044736+45-185+
|
SM00449+60-188+
|
PF00622+63-186+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-195
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
22211.980
|
5.917
|
-2.000
|
24.103
|
19.487
|
45.128
|
54.872
|
12.308
|
11.795
|
47.692
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
36.702
|
8.821
|
33.654
|
26.785
|
107.382
|
45.580
|
34.851
|
159.672
|
0.514
|
3.904
|
2.451
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.694
|
1.463
|
— |
1.972
|
-1.222
|
— |
1.704
|
-2.058
|
— |
5.116
|
— | — | — |
No JSON data available for plots.