Hg_chrom6_TN10mRNA_12804
Organism: Heterodera glycines Gene Locus: chr6:9772480-9776562 Feature type: polypeptideProtein Sequence
Length: 572
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.488 | 1.83 | 1.113 | 0.543 | 0.962 | 0.852 | 0.895 | 0.962 | 1.748 | 0.992 | 1.113 | 0.926 | 2.38 | 0.672 | 0.714 | 1.224 | 0.86 | 0.662 | 0.807 | 0.823 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12059
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.345
|
0.048
|
0.007
|
0.253
|
0.654
|
0.312
|
0.274
|
0.074
|
0.349
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000304
|
6.000
|
3.000
|
Hsc_gene_22683.t1;Hsc_gene_22683.t2;Hsc_gene_9704.t1
|
Hsc_gene_23955.t1;Hsc_gene_815.t2
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.769
|
IPR001870+189-375_371-566+|IPR003877+253-374_256-372_437-565_440-563+|IPR013320+196-375_383-566+|IPR043136+193-384_385-572+|IPR044736+240-371_422-562+|IPR050618+185-376+
|
SM00449+253-374_437-565+
|
PF00622+256-372_440-563+SPRY_domain
|
— |
PTHR12864+185-376+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-572
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
64665.050
|
6.436
|
-0.500
|
24.650
|
14.336
|
49.650
|
50.350
|
12.762
|
11.888
|
48.951
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
salmon
|
110.968
|
17.241
|
18.923
|
8.307
|
11.324
|
11.829
|
65.343
|
9.091
|
3.084
|
429.901
|
246.980
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.190
|
-1.082
|
— | — |
2.469
|
— |
2.983
|
— | — | — | — | — |
No JSON data available for plots.