SCN Proteipedia

Hg_chrom6_TN10mRNA_12808

Organism: Heterodera glycines Gene Locus: chr6:9802825-9806181 Feature type: polypeptide

Protein Sequence

Length: 322

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.903	0.939	0.847	1.285	0.776	1.274	0.665	1.242	1.242	1.553	1.318	0.913	1.121	0.896	1.014	0.887	0.764	1.082	1.194	0.457	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12063	—	—	1.222	1.000	2.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	plastid	—	PKSKKKR,KRLEQLLNPVGFYRRKTQ	—	—	—	—	—	—	0.039	—	—	0.176	0.385	0.418	0.181	0.060	0.052	0.115	0.013	0.035	0.128

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002350	3.000	1.000	Hsc_gene_9735.t2	Hsc_gene_9735.t1;Hsc_gene_9735.t2;Hsc_gene_9738.t1	—	P54137.2 Endonuclease III homolog [Caenorhabditis elegans]	KAI1731801.1 hhH-GPD superfamily base excision DNA repair protein [Ditylenchus destructor]	No	-0.240

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003824\|GO:0003906\|GO:0005634\|GO:0006281\|GO:0006284\|GO:0006285\|GO:0019104\|GO:0051539	GO:0008150_0.938\|GO:0009987_0.859\|GO:0003674_0.842\|GO:0005575_0.806\|GO:0110165_0.805\|GO:0050896_0.788\|GO:0051716_0.759\|GO:0008152_0.737\|GO:0044238_0.726\|GO:0003824_0.725\|GO:0043170_0.715\|GO:0006950_0.714\|GO:0016020_0.713\|GO:0006139_0.682\|GO:0016787_0.680\|GO:0033554_0.673\|GO:0090304_0.672\|GO:0005622_0.666\|GO:0006259_0.659\|GO:0006974_0.658\|GO:0140640_0.657\|GO:0016798_0.654\|GO:0006281_0.653\|GO:0016799_0.650\|GO:0019104_0.650\|GO:0140097_0.650\|GO:0043226_0.626\|GO:0043229_0.593\|GO:0043227_0.575\|GO:0043231_0.560\|GO:0006284_0.522\|GO:0003906_0.512	IPR000445+199-220+\|IPR003265+129-283_133-269_137-285+\|IPR003651+286-306+\|IPR004035+287-303+\|IPR011257+98-305+\|IPR023170+227-308+\|IPR030841+87-309+	SM00478+137-285+\|SM00525+286-306+	PF00633+199-220+Helix-hairpin-helix_motif\|PF00730+133-269+HhH-GPD_superfamily_base_excision_DNA_repair_protein	G3DSA:1.10.340.30:FF:000005+124-227+Endonuclease_III-like_protein_1	PTHR43286+83-315+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	304-322	1.000	1-303	7rds_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.741	35976.000	9.465	18.000	25.466	9.627	45.342	54.658	16.149	9.317	48.447

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	turquoise	433.094	181.975	214.801	175.714	255.879	1058.459	245.292	1819.080	65.582	363.897	236.048

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.188	—	0.512	2.062	-2.099	0.669	-2.745	—	—	—	—	—

No JSON data available for plots.

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