Hg_chrom6_TN10mRNA_12809
Organism: Heterodera glycines Gene Locus: chr6:9803735-9806404 Feature type: polypeptideProtein Sequence
Length: 257
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.041 | 0.995 | 0.849 | 1.208 | 1.038 | 1.197 | 0.649 | 0.973 | 1.47 | 1.367 | 1.415 | 0.916 | 0.54 | 1.048 | 1.191 | 0.778 | 0.765 | 1.002 | 0.898 | 0.458 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12063
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PKSKKKR,KRLEQLLNPVGFYRRKTQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.943
|
0.180
|
0.117
|
0.136
|
0.011
|
0.021
|
0.008
|
0.012
|
0.020
|
0.094
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002350
|
3.000
|
1.000
|
Hsc_gene_9735.t2
|
Hsc_gene_9735.t1;Hsc_gene_9735.t2;Hsc_gene_9738.t1
|
— |
P54137.2 Endonuclease III homolog [Caenorhabditis elegans]
|
KAI1731801.1 hhH-GPD superfamily base excision DNA repair protein [Ditylenchus destructor]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003824|GO:0003906|GO:0005634|GO:0006281|GO:0006284|GO:0006285|GO:0019104|GO:0051539
|
GO:0008150_0.925|GO:0009987_0.844|GO:0003674_0.840|GO:0005575_0.800|GO:0110165_0.797|GO:0008152_0.758|GO:0050896_0.758|GO:0044238_0.743|GO:0051716_0.732|GO:0043170_0.728|GO:0003824_0.723|GO:0006950_0.708|GO:0005622_0.703|GO:0006139_0.703|GO:0016020_0.695|GO:0090304_0.687|GO:0016787_0.678|GO:0033554_0.674|GO:0006259_0.661|GO:0006974_0.659|GO:0140640_0.658|GO:0043226_0.655|GO:0016798_0.654|GO:0140097_0.654|GO:0006281_0.653|GO:0016799_0.650|GO:0019104_0.650|GO:0043229_0.627|GO:0043227_0.595|GO:0043231_0.574|GO:0006284_0.522|GO:0003906_0.512
|
IPR000445+134-155+|IPR003265+64-218_68-204_72-220+|IPR003651+221-241+|IPR004035+222-238+|IPR011257+33-240+|IPR023170+161-243+|IPR030841+22-244+
|
SM00478+72-220+|SM00525+221-241+
|
PF00633+134-155+Helix-hairpin-helix_motif|PF00730+68-204+HhH-GPD_superfamily_base_excision_DNA_repair_protein
|
G3DSA:1.10.340.30:FF:000005+59-162+Endonuclease_III-like_protein_1
|
PTHR43286+18-250+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
239-257
|
1.000
|
1-238
|
7rds_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.748
|
28539.220
|
9.477
|
13.500
|
28.016
|
6.615
|
47.082
|
52.918
|
17.121
|
10.895
|
49.027
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
433.094
|
181.975
|
214.801
|
175.714
|
255.879
|
1058.459
|
245.292
|
1819.080
|
65.582
|
363.897
|
236.048
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.188
|
— |
0.512
|
2.062
|
-2.099
|
0.669
|
-2.745
|
— | — | — | — | — |
No JSON data available for plots.