SCN Proteipedia

Hg_chrom6_TN10mRNA_12811

Organism: Heterodera glycines Gene Locus: chr6:9809050-9811437 Feature type: polypeptide

Protein Sequence

Length: 137

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.509	1.867	1.062	0.755	0.608	0.749	0.608	1.825	1.135	1.48	0.885	2.147	1.014	0.983	1.341	0.834	0.838	1.217	1.123	0.859	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12065	—	—	1.444	1.000	1.000	2.000	2.000	2.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.965

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.453	0.286	0.078	0.546	0.148	0.131	0.081	0.020	0.093	0.283

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004447	2.000	1.000	Hsc_gene_9732.t1	Hsc_gene_9732.t1;Hsc_gene_9732.t2	—	Q5I0J5.1 MIT domain-containing protein 1 [Rattus norvegicus]	CAB3263851.1 MIT domain-containing protein 1-like [Phallusia mammillata]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.917\|GO:0005575_0.884\|GO:0110165_0.884\|GO:0009987_0.846\|GO:0003674_0.828\|GO:0005622_0.826\|GO:0065007_0.813\|GO:0016020_0.792\|GO:0043226_0.782\|GO:0043229_0.775\|GO:0005488_0.766\|GO:0043227_0.758\|GO:0043231_0.744\|GO:0071840_0.720\|GO:0005515_0.719\|GO:0016043_0.715\|GO:0006996_0.688\|GO:0061024_0.683\|GO:0065009_0.682\|GO:0007049_0.678\|GO:0022402_0.678\|GO:0000280_0.677\|GO:0048285_0.677\|GO:0051301_0.677\|GO:0000278_0.675\|GO:0140014_0.675\|GO:1903047_0.675\|GO:0044092_0.674\|GO:0000281_0.670\|GO:0000910_0.670\|GO:0032091_0.670\|GO:0032506_0.670\|GO:0043393_0.670\|GO:0051098_0.670\|GO:0051100_0.670\|GO:0061640_0.670\|GO:0061952_0.670\|GO:0090148_0.670\|GO:1902410_0.670\|GO:0042802_0.666\|GO:0008289_0.659\|GO:0005543_0.654\|GO:0019904_0.650\|GO:0035091_0.650\|GO:0005576_0.593\|GO:0005615_0.588\|GO:0031982_0.567\|GO:0043230_0.558\|GO:0065010_0.558\|GO:0070062_0.558\|GO:1903561_0.558\|GO:0030496_0.540	IPR032341+4-127+\|IPR038113+2-133+\|IPR052817+4-130+	—	PF16565+4-127+Phospholipase_D-like_domain_at_C-terminus_of_MIT	—	PTHR21222+4-130+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-137	4a5z_D	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.887	15685.120	9.150	6.500	25.547	11.679	47.445	52.555	16.058	9.489	49.635

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	83.936	83.753	75.489	56.886	67.759	40.711	93.705	71.315	15.523	171.969	104.921

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.381	-0.695	—	—	-0.720	1.214	0.707	0.536	—	—	—	—	—

No JSON data available for plots.

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