Hg_chrom6_TN10mRNA_12812
Organism: Heterodera glycines Gene Locus: chr6:9811684-9814220 Feature type: polypeptideProtein Sequence
Length: 152
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.918 | 1.683 | 1.077 | 0.681 | 1.535 | 1.181 | 0.627 | 0.329 | 1.17 | 1.6 | 1.595 | 0.387 | 0.731 | 0.886 | 0.537 | 0.846 | 0.647 | 0.997 | 0.0 | 0.774 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12066
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.951
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.608
|
0.415
|
0.031
|
0.461
|
0.128
|
0.109
|
0.096
|
0.026
|
0.083
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002316
|
3.000
|
1.000
|
Hsc_gene_9731.t1
|
Hsc_gene_9731.t1;Hsc_gene_9731.t2
|
— |
Q5RFD3.1 Proteasome activator complex subunit 3 [Pongo abelii]
|
KHN79450.1 Proteasome activator complex subunit 3 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008537
|
GO:0005575_0.734|GO:0110165_0.727|GO:0008150_0.704|GO:0005622_0.688|GO:0005737_0.660|GO:0043226_0.628|GO:0016020_0.620|GO:0043227_0.566|GO:0032991_0.511
|
IPR003185+14-64+|IPR009077+10-143+|IPR036252+12-143+|IPR036996+12-68+
|
— |
PF02251+14-64+Proteasome_activator_PA28,_N-terminal
|
— |
PTHR10660+10-143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19
|
1.000
|
20-152
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
16821.160
|
5.051
|
-2.500
|
28.947
|
5.921
|
50.658
|
49.342
|
13.816
|
15.132
|
49.342
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
magenta
|
225.655
|
150.813
|
247.664
|
248.386
|
232.655
|
200.798
|
215.222
|
323.743
|
91.832
|
311.134
|
217.147
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.487
|
0.583
|
— | — | — | — |
0.584
|
-0.447
|
— | — | — | — | — |
No JSON data available for plots.