Hg_chrom6_TN10mRNA_12816
Organism: Heterodera glycines Gene Locus: chr6:9851859-9858488 Feature type: polypeptideProtein Sequence
Length: 259
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.539 | 0.718 | 1.193 | 1.331 | 1.03 | 1.782 | 0.873 | 2.124 | 1.373 | 1.148 | 0.702 | 1.817 | 1.18 | 0.371 | 1.182 | 0.883 | 0.76 | 1.053 | 0.594 | 1.249 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12070
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.888
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.356
|
0.495
|
0.137
|
0.498
|
0.270
|
0.631
|
0.376
|
0.023
|
0.226
|
0.207
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010841
|
1.000
|
1.000
|
Hsc_gene_17278.t1
|
Hsc_gene_17278.t1
|
— |
Q76L36.1 NADPH-dependent conjugated polyketone reductase C2 [Candida parapsilosis]
|
KAI6238147.1 Oxidoreductase [Aphelenchoides fujianensis]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.796|GO:0003674_0.734|GO:0005575_0.663|GO:0110165_0.660|GO:0008152_0.647|GO:0003824_0.632|GO:0009987_0.627|GO:0005622_0.578|GO:0005737_0.537|GO:0016491_0.536|GO:0044238_0.513|GO:0016020_0.507
|
IPR020471+20-176_24-42_68-85_103-132+|IPR023210+13-183+|IPR036812+11-205_33-197+
|
— |
PF00248+13-183+Aldo/keto_reductase_family
|
— |
PTHR43827+20-176+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-259
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
29629.710
|
6.416
|
-0.500
|
27.413
|
13.514
|
48.263
|
51.737
|
14.672
|
12.741
|
45.174
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
191.317
|
49.532
|
60.183
|
38.470
|
20.216
|
23.122
|
10.338
|
38.165
|
116.200
|
659.855
|
426.860
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.502
|
-0.534
|
-0.960
|
— |
-1.154
|
— |
-1.745
|
— | — |
-4.819
|
— | — |
No JSON data available for plots.