Hg_chrom6_TN10mRNA_12819
Organism: Heterodera glycines Gene Locus: chr6:9879615-9881862 Feature type: polypeptideProtein Sequence
Length: 332
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.595 | 1.331 | 1.095 | 0.415 | 1.506 | 1.545 | 0.789 | 0.753 | 1.272 | 0.936 | 1.369 | 0.886 | 2.092 | 0.521 | 0.676 | 1.291 | 0.839 | 0.73 | 0.463 | 0.709 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12073
|
— | — |
1.222
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKILEKISELEKQTKKKLN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.476
|
0.071
|
0.008
|
0.635
|
0.349
|
0.252
|
0.096
|
0.044
|
0.113
|
0.331
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.945|GO:0003674_0.839|GO:0032502_0.747|GO:0048856_0.747|GO:0003824_0.692|GO:0009653_0.688|GO:0048646_0.678|GO:0030435_0.674|GO:0043934_0.674|GO:0051703_0.674|GO:0016740_0.673|GO:0140096_0.672|GO:0030587_0.670|GO:0099120_0.670|GO:0016772_0.659|GO:0016301_0.655|GO:0016773_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+133-326+|IPR003877+199-325_202-323+|IPR013320+154-326+|IPR043136+128-332+|IPR044736+184-322+|IPR050618+106-323+
|
SM00449+199-325+
|
PF00622+202-323+SPRY_domain
|
— |
PTHR12864+106-323+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-124
|
1.000
|
125-332
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.578
|
37606.080
|
5.072
|
-6.500
|
28.916
|
12.048
|
54.819
|
45.181
|
13.855
|
15.060
|
46.386
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
purple
|
47.123
|
21.411
|
22.371
|
23.439
|
34.230
|
33.385
|
192.028
|
37.305
|
35.035
|
43.327
|
39.773
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.531
|
— |
2.504
|
— | — | — | — | — |
No JSON data available for plots.