Hg_chrom6_TN10mRNA_12823
Organism: Heterodera glycines Gene Locus: chr6:9901397-9903724 Feature type: polypeptideProtein Sequence
Length: 331
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.843 | 1.405 | 1.154 | 0.729 | 1.259 | 1.472 | 0.647 | 0.755 | 1.074 | 1.102 | 1.556 | 1.777 | 1.511 | 0.407 | 1.11 | 1.295 | 0.495 | 0.595 | 0.465 | 0.622 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12077
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
2.000
|
3.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.904
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.525
|
0.075
|
0.017
|
0.569
|
0.284
|
0.177
|
0.069
|
0.033
|
0.094
|
0.276
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000103
|
11.000
|
4.000
|
Hsc_gene_13658.t1;Hsc_gene_17480.t1;Hsc_gene_22734.t1;Hsc_gene_22926.t1
|
Hsc_gene_22734.t1;Hsc_gene_8972.t2
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAI5057300
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.945|GO:0003674_0.832|GO:0032502_0.770|GO:0048856_0.766|GO:0009653_0.695|GO:0003824_0.682|GO:0048646_0.680|GO:0030435_0.673|GO:0043934_0.673|GO:0030587_0.670|GO:0051703_0.670|GO:0099120_0.670|GO:0140096_0.669|GO:0016740_0.667|GO:0016772_0.657|GO:0016301_0.654|GO:0016773_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+128-324+|IPR003877+194-323_197-321+|IPR013320+131-324+|IPR043136+121-331+|IPR044736+179-320+|IPR050618+90-324+
|
SM00449+194-323+
|
PF00622+197-321+SPRY_domain
|
— |
PTHR12864+90-324+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-105
|
1.000
|
106-331
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.809
|
37622.670
|
8.750
|
8.500
|
31.118
|
9.668
|
54.985
|
45.015
|
17.221
|
13.897
|
45.317
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
red
|
22.403
|
11.586
|
41.234
|
42.433
|
56.100
|
25.705
|
35.868
|
10.207
|
0.000
|
14.338
|
8.193
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.601
|
1.738
|
— |
0.371
|
-1.112
|
— |
-1.433
|
1.949
|
— |
6.264
|
— | — | — |
No JSON data available for plots.