Hg_chrom6_TN10mRNA_12827
Organism: Heterodera glycines Gene Locus: chr6:9917188-9924436 Feature type: polypeptideProtein Sequence
Length: 530
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.527 | 1.492 | 1.098 | 0.455 | 1.541 | 1.403 | 1.325 | 0.755 | 1.384 | 0.765 | 1.401 | 0.888 | 1.73 | 0.327 | 0.424 | 0.997 | 0.959 | 0.515 | 0.726 | 1.332 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12080
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRKRKTNKIMEKKKTI,RKTKKRKRKTNKIMEKKKT,KRKTKKRKRKTNKIMEKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.796
|
0.027
|
0.015
|
0.460
|
0.203
|
0.059
|
0.040
|
0.006
|
0.066
|
0.159
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAG0266862
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.947|GO:0003674_0.863|GO:0032502_0.747|GO:0048856_0.747|GO:0003824_0.729|GO:0009653_0.687|GO:0016740_0.683|GO:0048646_0.678|GO:0140096_0.677|GO:0051703_0.674|GO:0030435_0.670|GO:0030587_0.670|GO:0043934_0.670|GO:0099120_0.670|GO:0016772_0.661|GO:0016301_0.656|GO:0016773_0.655|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+330-524+|IPR003877+396-523_399-520+|IPR007588+1-46+|IPR013320+340-524+|IPR043136+322-530+|IPR044736+381-520+|IPR050618+120-520+
|
SM00449+396-523+
|
PF00622+399-520+SPRY_domain|PF04500+1-46+FLYWCH_zinc_finger_domain
|
— |
PTHR12864+120-520+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
55-228
|
2.000
|
1-54;229-530
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.567
|
59409.770
|
4.744
|
-17.000
|
28.113
|
13.208
|
52.830
|
47.170
|
12.830
|
15.283
|
47.358
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
156.722
|
5.564
|
40.179
|
17.047
|
14.007
|
11.287
|
20.598
|
5.509
|
377.077
|
360.030
|
367.336
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.620
|
1.477
|
-1.128
|
— | — |
0.877
|
-1.145
|
2.047
|
— | — |
-4.466
|
— | — |
No JSON data available for plots.