Hg_chrom6_TN10mRNA_12833
Organism: Heterodera glycines Gene Locus: chr6:9956480-9962249 Feature type: polypeptideProtein Sequence
Length: 485
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.127 | 0.527 | 0.637 | 1.138 | 0.687 | 0.74 | 0.736 | 1.031 | 1.237 | 1.811 | 0.344 | 1.698 | 1.947 | 0.753 | 1.136 | 1.178 | 0.744 | 1.375 | 1.745 | 0.364 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12086
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.082
|
0.149
|
0.014
|
0.102
|
0.279
|
0.514
|
0.465
|
0.220
|
0.570
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010844
|
1.000
|
1.000
|
Hsc_gene_13489.t1
|
Hsc_gene_13489.t1;Hsc_gene_5607.t1;Hsc_gene_8965.t1;Hsc_gene_8974.t1;Hsc_gene_9655.t1;Hsc_gene_9655.t2;Hsc_gene_9665.t1
|
— |
O57379.1 Solute carrier family 22 member 6 [Pseudopleuronectes americanus]
|
KAI1725310.1 sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.935|GO:0009987_0.898|GO:0051179_0.807|GO:0006810_0.806|GO:0051234_0.806|GO:0003674_0.803|GO:0005575_0.800|GO:0110165_0.799|GO:0055085_0.763|GO:0005886_0.760|GO:0016020_0.760|GO:0071944_0.760|GO:0005215_0.709|GO:0022857_0.709|GO:0071705_0.543
|
IPR005828+76-443+|IPR005829+84-100_126-151+|IPR020846+1-436+|IPR036259+43-447_67-441+
|
— |
PF00083+76-443+Sugar_(and_other)_transporter
|
— |
PTHR24064+38-441+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
452-485
|
1.000
|
1-451
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.655
|
53499.930
|
7.490
|
6.000
|
17.526
|
12.577
|
35.464
|
64.536
|
9.897
|
7.629
|
50.722
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
183.917
|
89.804
|
425.752
|
88.562
|
49.823
|
93.920
|
51.947
|
370.184
|
16.888
|
353.223
|
209.079
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.014
|
— |
-2.156
|
-0.859
|
0.927
|
-0.842
|
1.872
|
-2.688
|
-4.525
|
— | — | — | — |
No JSON data available for plots.