Hg_chrom6_TN10mRNA_12834
Organism: Heterodera glycines Gene Locus: chr6:9965317-9967656 Feature type: polypeptideProtein Sequence
Length: 268
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.738 | 1.302 | 0.95 | 0.386 | 0.995 | 1.244 | 1.111 | 0.56 | 1.493 | 1.109 | 1.413 | 1.097 | 1.969 | 0.359 | 0.533 | 0.906 | 0.856 | 0.961 | 0.861 | 1.097 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12087
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
34B08|AF5000371#tn8jg8948t1
|
Hsc_gene_25557
|
— | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-23
|
0.998
|
1.000
|
0.000
|
0.000
|
0.451
|
0.091
|
0.007
|
0.573
|
0.331
|
0.205
|
0.139
|
0.093
|
0.158
|
0.444
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
— | — |
Q5RBR6.1 SPRY domain-containing protein 3 [Pongo abelii]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
XP_018031156
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.756|GO:0005575_0.609|GO:0110165_0.604|GO:0005622_0.535|GO:0016020_0.526|GO:0009987_0.513|GO:0005737_0.508
|
IPR001870+63-255+|IPR003877+127-254_130-252+|IPR013320+79-255+|IPR043136+56-264+|IPR044736+115-251+|IPR050618+39-252+
|
SM00449+127-254+
|
PF00622+130-252+SPRY_domain
|
— |
PTHR12864+39-252+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-268
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
29961.230
|
8.216
|
3.500
|
24.254
|
13.060
|
46.269
|
53.731
|
13.060
|
11.194
|
47.388
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
3503.264
|
86.201
|
3122.520
|
1050.368
|
167.471
|
15.273
|
8.710
|
131.395
|
18006.665
|
103.555
|
7776.316
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.950
|
3.470
|
-1.463
|
-2.681
|
-3.439
|
— |
3.012
|
-3.781
|
7.348
|
— | — |
13.586
|
— |