Hg_chrom6_TN10mRNA_12837
Organism: Heterodera glycines Gene Locus: chr6:9978239-9983086 Feature type: polypeptideProtein Sequence
Length: 502
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.625 | 1.343 | 1.159 | 0.618 | 1.394 | 1.43 | 0.83 | 0.598 | 1.417 | 1.077 | 1.268 | 1.172 | 1.937 | 0.69 | 0.528 | 1.024 | 0.882 | 0.543 | 1.226 | 0.879 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12090
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.314
|
0.082
|
0.009
|
0.510
|
0.283
|
0.215
|
0.162
|
0.027
|
0.235
|
0.503
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
Hsc_gene_17886.t1;Hsc_gene_22972.t1;Hsc_gene_815.t1;Hsc_gene_815.t2
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0016020
|
GO:0008150_0.649|GO:0005575_0.631|GO:0110165_0.622|GO:0005622_0.581|GO:0003674_0.560|GO:0016020_0.555|GO:0043226_0.534|GO:0043229_0.527|GO:0005737_0.519
|
IPR001190+1-80+|IPR001870+303-496+|IPR003877+367-495_370-493+|IPR013320+319-496+|IPR036772+2-87_4-85+|IPR043136+299-502+|IPR044736+353-492+|IPR053243+3-103+
|
SM00449+367-495+
|
PF00622+370-493+SPRY_domain
|
— |
PTHR47653+3-103+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
104-153
|
2.000
|
1-103;154-502
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.518
|
57046.230
|
4.691
|
-16.000
|
26.892
|
12.749
|
50.797
|
49.203
|
12.151
|
14.741
|
46.016
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
33.230
|
10.959
|
53.403
|
57.679
|
99.638
|
34.912
|
39.605
|
14.032
|
14.680
|
18.036
|
16.598
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.055
|
2.260
|
— |
0.755
|
-1.498
|
— |
-1.420
|
1.635
|
— | — | — | — | — |
No JSON data available for plots.