Hg_chrom6_TN10mRNA_12842
Organism: Heterodera glycines Gene Locus: chr6:10025769-10026897 Feature type: polypeptideProtein Sequence
Length: 183
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 1.652 | 0.994 | 0.942 | 0.364 | 0.981 | 1.171 | 0.546 | 1.457 | 1.034 | 0.828 | 0.643 | 1.973 | 0.631 | 1.115 | 1.483 | 0.627 | 0.828 | 0.841 | 1.125 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12094
|
— | — |
1.556
|
2.000
|
1.000
|
2.000
|
3.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.560
|
0.256
|
0.026
|
0.550
|
0.379
|
0.118
|
0.029
|
0.034
|
0.101
|
0.315
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000103
|
11.000
|
4.000
|
Hsc_gene_13658.t1;Hsc_gene_17480.t1;Hsc_gene_22734.t1;Hsc_gene_22926.t1
|
Hsc_gene_17480.t1;Hsc_gene_22734.t1;Hsc_gene_22926.t1;Hsc_gene_9707.t1
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAB8070628
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.907|GO:0003674_0.835|GO:0003824_0.723|GO:0032502_0.714|GO:0048856_0.713|GO:0009653_0.679|GO:0048646_0.676|GO:0016740_0.672|GO:0030435_0.670|GO:0030587_0.670|GO:0043934_0.670|GO:0051703_0.670|GO:0099120_0.670|GO:0140096_0.662|GO:0016772_0.655|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650|GO:0016301_0.650|GO:0016773_0.650
|
IPR001870+1-183+|IPR003877+54-183_57-168+|IPR013320+5-167+|IPR043136+4-173+|IPR044736+39-166+
|
SM00449+54-183+
|
PF00622+57-168+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-183
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.966
|
20147.830
|
9.153
|
7.000
|
19.672
|
13.115
|
44.809
|
55.191
|
12.022
|
7.650
|
54.645
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
5.442
|
0.298
|
2.748
|
2.686
|
3.766
|
0.621
|
6.384
|
0.827
|
0.000
|
17.311
|
9.892
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.954
|
3.013
|
— | — | — |
3.362
|
— |
3.088
|
— | — | — | — | — |
No JSON data available for plots.