Hg_chrom6_TN10mRNA_12848
Organism: Heterodera glycines Gene Locus: chr6:10063738-10066081 Feature type: polypeptideProtein Sequence
Length: 353
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.593 | 1.186 | 1.288 | 0.391 | 1.511 | 1.598 | 0.877 | 0.85 | 1.385 | 0.919 | 1.331 | 1.0 | 1.889 | 0.49 | 0.463 | 1.133 | 0.836 | 0.816 | 0.654 | 0.833 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12100
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.534
|
0.084
|
0.011
|
0.644
|
0.283
|
0.257
|
0.118
|
0.035
|
0.137
|
0.290
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
Hsc_gene_8977.t1
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAH9541125
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.941|GO:0003674_0.858|GO:0003824_0.748|GO:0032502_0.737|GO:0048856_0.737|GO:0016740_0.688|GO:0009653_0.686|GO:0140096_0.681|GO:0048646_0.678|GO:0051703_0.674|GO:0030435_0.670|GO:0030587_0.670|GO:0043934_0.670|GO:0099120_0.670|GO:0016772_0.664|GO:0016301_0.658|GO:0016773_0.656|GO:0004672_0.654|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+156-347+|IPR003877+218-346_221-344+|IPR013320+165-347+|IPR043136+149-353+|IPR044736+206-343+
|
SM00449+218-346+
|
PF00622+221-344+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-107
|
1.000
|
108-353
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.636
|
39851.510
|
4.594
|
-15.000
|
28.895
|
12.181
|
53.258
|
46.742
|
12.748
|
16.147
|
46.742
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
81.041
|
46.494
|
61.755
|
85.733
|
76.481
|
70.619
|
263.455
|
84.496
|
61.028
|
50.397
|
54.953
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.747
|
0.582
|
— | — |
1.906
|
— |
1.778
|
— | — | — | — | — |
No JSON data available for plots.