Hg_chrom6_TN10mRNA_12849
Organism: Heterodera glycines Gene Locus: chr6:10069052-10073491 Feature type: polypeptideProtein Sequence
Length: 417
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.948 | 0.669 | 1.395 | 0.496 | 0.959 | 1.353 | 0.514 | 1.679 | 0.959 | 1.393 | 1.235 | 1.975 | 1.599 | 1.107 | 1.175 | 0.788 | 0.59 | 0.908 | 0.553 | 0.564 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12101
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
FKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.448
|
0.437
|
0.096
|
0.470
|
0.063
|
0.041
|
0.057
|
0.037
|
0.118
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004456
|
2.000
|
1.000
|
Hsc_gene_12038.t1
|
Hsc_gene_12038.t1
|
— |
Q4UKQ3.1 Ribosomal large subunit pseudouridine synthase C [Rickettsia felis URRWXCal2]
|
KAI1731816.1 RNA pseudouridylate synthase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001522|GO:0003723|GO:0009451|GO:0009982
|
GO:0005575_0.899|GO:0110165_0.892|GO:0005622_0.868|GO:0016020_0.828|GO:0043226_0.820|GO:0043229_0.809|GO:0043227_0.781|GO:0005737_0.780|GO:0043231_0.754|GO:0008150_0.617|GO:0005739_0.568|GO:0009987_0.562|GO:0003674_0.559|GO:0008152_0.504|GO:0065007_0.501
|
IPR006145+164-272+|IPR020103+152-366+|IPR050188+97-409+
|
— |
PF00849+164-272+RNA_pseudouridylate_synthase
|
— |
PTHR21600+97-409+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-122
|
1.000
|
123-417
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
47540.780
|
8.027
|
9.000
|
30.695
|
11.751
|
47.962
|
52.038
|
17.266
|
13.429
|
45.324
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1127.348
|
1636.288
|
1367.731
|
1605.133
|
1401.164
|
1172.496
|
970.516
|
1235.744
|
578.445
|
977.412
|
806.426
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.488
|
-0.165
|
0.339
|
-0.228
|
-0.242
|
-0.263
|
— |
-0.206
|
— | — | — | — | — |
No JSON data available for plots.