Hg_chrom6_TN10mRNA_12850
Organism: Heterodera glycines Gene Locus: chr6:10073999-10075279 Feature type: polypeptideProtein Sequence
Length: 144
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 0.323 | 0.884 | 0.958 | 0.347 | 0.178 | 0.579 | 1.042 | 1.235 | 1.783 | 0.631 | 0.817 | 1.929 | 0.401 | 2.693 | 1.488 | 1.025 | 1.157 | 3.205 | 0.204 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12102
|
— | — |
2.222
|
2.000
|
3.000
|
1.000
|
3.000
|
1.000
|
2.000
|
1.000
|
4.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RHRR,RRRR
|
43-63
|
0.999
|
54-78
|
0.993
|
— | — |
0.000
|
— | — |
0.412
|
0.334
|
0.171
|
0.297
|
0.057
|
0.025
|
0.071
|
0.291
|
0.104
|
0.516
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004457
|
3.000
|
0.000
|
0.000
|
— | — | — |
KAH7731669.1 RNA pseudouridylate synthase family protein [Aphelenchus avenae]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-144
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
16763.740
|
11.854
|
16.500
|
26.389
|
13.889
|
45.139
|
54.861
|
19.444
|
6.944
|
45.833
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
55.265
|
74.408
|
49.007
|
34.026
|
39.087
|
31.162
|
45.013
|
27.232
|
8.932
|
122.608
|
73.890
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.835
|
-1.266
|
— | — | — |
0.540
|
— |
0.869
|
— | — | — | — | — |
No JSON data available for plots.